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Query: gi|30260207|ref|NP_842584.1| hypothetical protein (BA_0013) [Bacillus anthracis str. Ames], from B.anthracis

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTAHISGDWRTRYQHVTSFYFKTNHKVWCKDIMSLLHTHIPMIIFIDMKGVNMDLIIQTFPLDGKTLYYVQCPVCKNNRILNSGANVSRIISDDTFRKLCGCTCDVKQTATKVEAPKKVKKEAVKKEAAPKRTGKVLTAVINGKEMTVKEIAEAYDISTSTVRQRINAGKSESEIIAPTKKKLast
1 -7.470[K] COG2345 Predicted transcriptional regulator  ali follow..  20  1...................................................................................................................MGDVVKGNDAHTGDGDTRR-KILLILLERAPVIASDIAEQLQLSTVGVRRHLDNLVEENLAEAANPRQ 67
2 -7.300[S] COG4519 Uncharacterized protein conserved in bacteria  ali follow..  15  1............................................................................................................................MELSPVFARRLYLALLVESLERPNVPKLIEKTGWPRRTIQDVIKA.............. 45
3 -7.020[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  14  8.........................................................................................................................REIINDMDTLKRHISVINVLLREQPIGIIKLSQETGIPEHKIRYSLRILEQENII....... 62
4 -6.750[K] COG1405 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB  ali follow..  16  161................................................IRGRSIEGVVA-------GALYAACRITNVPRTLGEIASVTRVKKKETYRIMS-----ISRFCSKLKLSMDTRNKALEILRDAENSGKYIASLITGERRTQRAVAEVAGVTEVTIRNRYKELTEKLKLNVE.... 311
5 -6.580[K] KOG1597 Transcription initiation factor TFIIB  ali follow..  11  142................................................SRGRNQDALLA-------ACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKMRRFCSNLGMTNQTVKAAQRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAW.. 299
6 -6.390[R] COG3413 Predicted DNA binding protein  ali follow..  18  162...........................................................................................................................DTMEALTDLQVKTIKQAYVNGRRCTLGDLAKINGISKNAMAKRLK--SVEKKIFE..... 219
7 -6.210[K] COG1813 Predicted transcription factor, homolog of eukaryotic MBF1  ali follow..  12  5...........................................LIIADRSLFNKATLKGLVGKLMAKAKPKYCELCGRE----IKGEGHIIRIEGAELLVCDCYRKYGRKPGTFSIMPRREPRRRITSSKPRVPAERVMEAIRKSGLSYEELSHKVGLSVNLL-RRIAHGEYTPTIEEARK.. 155
8 -6.170[K] COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog  ali follow..  18  112.........................................................................................................................RTALAKLPDDQREAILLIGA---SGFAYEEAAEICGCPVGTIKSRVSRARLR.......... 160
9 -6.050[R] KOG4684 Uncharacterized conserved protein, contains C4-type Zn-finger  ali follow..  21  56...................................................INCRVCQSLINLDGKL-HVVKCTVCNEATPIKNPPTGKKYV-----RCPCNCLLICKDTSRRIGCPRPNCRRII.......................................................... 125
10 -5.990[R] COG2522 Predicted transcriptional regulator  ali follow..  13  1.................................................................................................................MHQKIELPCEYAAKNIFPSIRASIAKILVEEYKMSKYSVAKMLGATPTAVSYYISGKRGEK......... 61
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.