current user: public
If you have questions about the server, please let us know.

Query: gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MGGFNMELFDENYYAKAVANIIGEVKDPIMYKWFSPDQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPEQIKEEVASGDKDKMDKIFEKIEAGLSKLELGDEFSTPMMVIVDPATSLKLVKPYAAAQGAASSCEKWEDVLIQTIKAINNREDVYIETSNLLKHKILIYPLNSELIKFKPSKYMLPTPNEQVDKDSTDVAHSYIDFVLGGLLATRKTILQVNIKQSLast
1 -7.020[S] COG4834 Uncharacterized protein conserved in bacteria  ali follow..  10  79................................................................MYDYSGRGKRHSGRGEDIPTVDVAYAQKSVPVVLGTIGYDYTTEELRQSAFLRKPLNTARADAAMDYERHINDVALFGE--------------DELTGLYTHPGVPVLLNTAGPWIGQAQVLALFNQLISSAMNTHYVEMIDTVLLPGRVMNYLVSTPRSDNSDKTILHYVLE---NNIAKAERGLDLTVRTGYGLETRAMVYTKNPTKLVL---HLPMPIRFLPPQPKGLRFDIPGEYKYSGVEFRYPKSALYAD.... 325
2 -4.930[H] COG2082 Precorrin isomerase  ali follow..  11  1........................................................................................MHYIQQPQTIEANSFTIISDIIRETRPDYRFASPLHEAIIKRVIHTTADFDWLDILWFSADA-----------------EQLCDALRHPCIIYTD--TTMALSGINKRLL-ATFGGECRCYISDPRVVRAAQTQGITRSMAAVDIAIAEEEKNKLFVFGNAPTALFRLLEHNVTVSGVVGVPVGFVGAAESKEALPAVAALGRKGGSNVAAAIVNALL.................. 204
3 -4.840[S] COG1659 Uncharacterized protein, linocin/CFP29 homolog  ali follow..  14  75...............................................................................................LVRLRVPFTLSRNEIDDVERGSKDSWEPVKEAAKKLAFVEDRTIFEGYSA------------ASIEGIRSASSNPALTLPEDP----REIPDVISQALSELR-LAGVDGPYSVLLSADVYTKVSETSDHGYPIREHLNRLVDGDIIWAPAIDGAFVLTTRGGDF................................................................. 222
4 -4.390[Z] KOG1850 Myosin-like coiled-coil protein  ali follow..  11  135.........................................................LGKEVLLLMQALNTLSTPEEKLAALCKKYADLQKQMKILQKKQAQIVKEKVHLQSEHSKAILARSKLESLCRELQR--NKTLKEENMQQAREEEERRKEATAHFTLDEIQAQLEQHDIHNAKQENIELGEKLKKLIEQYALREEHIDKVF-LQQQLVDAKLQQTTQLIKEADEKHQREREFLLKEATESRHKYEQMKQQEVQLKQQLSLY--NELFTTFRQEMEKMTKKIKKLEKETIIWRTKW---------NNNKALLQMAEEKT 418
5 -4.360[Z] KOG0679 Actin-related protein - Arp4p/Act3p  ali follow..  10  76...............RDGAEVMSPLKNGMIEDWECFRAIDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLD--SGATHTTAIPVHDGYVLAGDFISMQCRELFQEMAIDIIPP-AAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQMPTVHYEMPLFDPSNVKGLSGNTMLGVGHVVTTSIGMCDIDIRPGLYGSVIVTGGNTLLQGFTDRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQ 411
6 -4.340[C] COG2838 Monomeric isocitrate dehydrogenase  ali follow..  12  1......................................MSAEQWTIIYTLTDEAPLLATYAFLPIVRAFTKPAGIKVQTSDISVA--------RILAEFPDYLTEEQ-----VPNNLAELGRLTQLPDTNIIKLPN------SASVPQLMAAIKELQAKGFKLPDYPQDPKSYQEIDIRNRYGKCLGSAVNPVLR-EGNSDRRAPKAVKEYARNNPHSMGEWSMASRTHVATMRHGDFY-------HGEKSMTLDRARDVK--MELATKKGPKVSLRDGDIIDSMFMS--KKALCEFYEEQMEDARKTSLHVKATMMKVS.... 264
7 -4.190[S] COG2960 Uncharacterized protein conserved in bacteria  ali follow..  17  1..........................................................................................................................................MALNTYQYRETTMIDPKKIEQIARQVH--ESMPKGIREFGEDVEKKIRQTLQAQLTRLDL-EEFDVQTQVLLRTREKLALLE........................................................................................................ 82
8 -4.040[R] COG4989 Predicted oxidoreductase  ali follow..  12  41...............................................................................................................DHGITTFDHADIYGGYTCE---------LFGNALALSPGLRENIELVTKCGIVLESPERPAHRSHHYNTSKSHILASVEQSLMNLRT-DYIDMLLIHRPDPLMDPELKCSGKVRYFGVSNFKDHQYRMLESYKLVTNQIELSAYELENMLDGTLNLPLAGGKVFTENTDKDRRVRTALESVQGEIGAASLDEVMYAWLYTHPAGIMPI..... 262
9 -3.970[M] COG2825 Outer membrane protein  ali follow..  6  13......................................................................ALAASASVQAADKIAIVNVSSIFQQLPAREAVAKQLENEFKGRATELQGMERDLQTKMQKLQR-------GSTMKASDRTKLENEVMKQRETFSTKAQAFEQDNRRRQAEERNKILSRIQDAVKSVATKGGYD......................................................................................................................... 139
10 -3.910[G] COG4101 Predicted mannose-6-phosphate isomerase  ali follow..  12  64.........................................................................................................................................YVLSGEVHTWYGDRLEHHIVVKAGDLFYIPAGVPHLPANLSSAPSSAVIARTDPNEQE................................................................................................................................. 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.