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current user: public |
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Query: gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31], from B.burgdorferi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
# | Score | Template | Links and tools | %id | First | MKMSEQESLQAQVAGEEELLVTKLHSEVLLLLGIDKFALSRQNFLLHLSLLQAILVTRGIDASSLTYEQIFLLTFYHMGCQLRKQGVVREFEFDRIKKEKFNELELDYYPSSSGGEEGGEGSCGSNKNFCSQLDAFLEKLKRETSTPSCVGVV | Last |
1 | -5.010 | [S] COG3361 Uncharacterized conserved protein | ali follow.. | 8 | 34 | ..............................IFDQRWTDLTFIHWPVLPESVAGSY--PGTRPDVFADGMTYVGLVPFRMSSTKLGTA-----------GTFPETNVRLYSIDNAGRHG................................... | 115 |
2 | -4.910 | [S] COG4721 Predicted membrane protein | ali follow.. | 15 | 112 | ......................SVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYD..................................................... | 189 |
3 | -4.880 | [R] COG1266 Predicted metal-dependent membrane protease | ali follow.. | 21 | 1 | ..................................................MDIRVITMGLPMNPLTAFTLAFLLYITHG--------FYLSGFIRPFQRRFGEIEGYWI............................................ | 51 |
4 | -4.840 | [Z] KOG2053 Mitochondrial inheritance and actin cytoskeleton organization protein | ali follow.. | 12 | 328 | ...HGLEFGKTCLKTELQFSDYYCLLAVHALIDVWRETGDETTVWQALTLLEEGLTH---SPSNAQFKLLLVRIYCMLGAFEPVVDLYSSLDAKHIQHDTIGYL-LRFFHSNQKDTSEYIIQAYKYGAFEKEFIAFRNRLNNSLHF....... | 489 |
5 | -4.510 | [O] KOG0719 Molecular chaperone (DnaJ superfamily) | ali follow.. | 15 | 32 | ..........................................................................PYSV-------GVEKDASDELIRR-AYRKKALQHHPDRIHDEEKKVEARIEFDKVAIAYGVLSDKKRRKH......... | 94 |
6 | -4.460 | [R] KOG4804 Predicted membrane protein | ali follow.. | 13 | 185 | ..............................FFIISDLTIALNKF-----------------CFPVPYSRALIMSTYYVAQMLVALSAVESREPVEHYRLT..................................................... | 237 |
7 | -4.460 | [H] COG0315 Molybdenum cofactor biosynthesis enzyme | ali follow.. | 20 | 110 | ..........................................................GVEMEALTAASVAALTIYDMCKAVQKDMIIGPVRLLTKSGGKSGDFKVDI............................................. | 159 |
8 | -4.330 | [C] COG1740 Ni,Fe-hydrogenase I small subunit | ali follow.. | 11 | 1 | MIDYHQSRLSALEKLPSLKDNDSITKAL------EKSGFSRRDFMKWAGAMTAFLALPASFTPMVLADRLPVVWLHMAECT-----SLLRSDTPTIDSLIFDYISLEYHETVMAAAMGDTEHFLTIGAHGKTGYELSKMASENALAIFAIG.. | 179 |
9 | -4.240 | [S] COG3714 Predicted membrane protein | ali follow.. | 14 | 167 | ..............................LLFIGNIVWLGSHY-----------------RRRFRADNAIAAACYFAGHFLIVRSLY................................................................. | 207 |
10 | -4.210 | [R] KOG2966 Uncharacterized conserved protein | ali follow.. | 15 | 209 | ..FKELEAEKAVIDVKAHTLVRKELWAGLGYLILQTAGFMRLTFWELSDVMEPIC--------YVTSVYFMAGYAFFLRTS-------KEPSFEGFYQSRFYEFDLERYNELKKLFCSKPS---------DHVSKILGAIKS........... | 336 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |