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Query: gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MDLRLGNNFELVFNNDLSLVDGIDEQKQRFLIFLKTLRGSLSYAPHWGLDYFLLLKLLKINNLHAVKNYFHEISKELNLDLINISTTIQDNKAHISFFFSGDVLNMEFNLLast
1 -11.200[S] COG4381 Mu-like prophage protein gp46  ali follow..  16  1MDKELNPS------IGDYTGRTVDTLQNAVYIRLMTPLGSWWADKTLGSLLHLLQREKDLQRVQYADEALQPIVKSGRADKITVRAEQPHDILHIRMDTAAGGFDYRHEV 112
2 -8.500[R] COG3628 Phage baseplate assembly protein W  ali follow..  12  6.............NTTGRALSDLPHVAQSMRDILSTPIGSRVMRRDYGSQVPELIPATRLRTMSAAVSALVRWEPRIRIASVRFWID....................... 84
3 -7.080[S] COG3518 Uncharacterized protein conserved in bacteria  ali follow..  16  16FERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVRIKLAIQQCLERYEPRLTRVLVRASFNPLTLRFHITATI....... 121
4 -5.600[S] KOG4457 Uncharacterized conserved protein  ali follow..  16  61.......................ERKPEDLDRAYEVLRTTLPKLFVEPLDYSIYSPGLIFHNIAILRTVGHLKYAYVKFEVLKITKHQDDYTVRIRWRVRG......... 154
5 -4.980[J] COG0360 Ribosomal protein S6  ali follow..  13  2......RHYEIVFMVHPDQSEQVAGMIERYTGSITEAGGKIHRLEDWGR-YVLMNVEADQAVVDELETAFRFNDAVLRNMIMRTKAAITEPSI................. 101
6 -4.960[K] COG5118 Transcription initiation factor TFIIIB, Bdp1 subunit  ali follow..  18  364..LKLNPDGTMAIDEETMVVDRHKNAVEEMIKFYKALS-------MWGTDFNLISQLYPYRSRKQVKAKF---VNEEKKRPILIELALRSKLPNFDEY............ 484
7 -4.870[S] COG3750 Uncharacterized protein conserved in bacteria  ali follow..  10  25.................AFIERIERLEEEKKTIGDDIKEVYAELKGSGFDSKVVRTIIRLRKKEDHERQEEEAMLQLYMDALGMS......................... 92
8 -4.830[K] KOG1194 Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains  ali follow..  9  110.LIHVGTEYQAIIQPTAEQLEKEPCRDNRLTEYISEATGRYQLPIDRAL---FILNKQSNDFDAAMVQAFSTCFFHFGKRFKKIHAAMPQRSLSIQYYY........... 235
9 -4.800[L] KOG1508 DNA replication factor/protein phosphatase inhibitor SET/SPR-2  ali follow..  15  179...........QIANHPQMSALITDEDEDMLSYMVSLEVEEEKHPVHLCKIMLFFR---FQNKVITKEYLVNITEYRASHSTPIEYRRRHHNSSLNFFFSDHNFAGSNKI 289
10 -4.750[I] COG4706 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase  ali follow..  11  16..........LPHSGRMVLIDRITRYGDDFVEAGAQVSPNHILLLDDKLPYTAFIELMAQAVGAYAGIQARKNARSVRLGFL---LGTRKLEIFAQSVPIGTHLLATAHM 112
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.