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Query: gi|11497091|ref|NP_051163.1| hypothetical protein (BB_P02) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTEKEEKEDLQAQDKEEQQIKADTKVISVQEFEEYMRFKEQANSKSKETSRDLSINERITKELAEVEERERIEKQLLLEAERINEIDTLAKAHLSNHFNKEVLLAKGYTLKDIMQAQRRELVRKFVPIEQIKAIAKVSDISHIDGEILEQLVSLAKVNIKLRKNASSSSSSVDSIKGNIAIKSEERASLLDSNFVPINFTEFVQAISNTYKQRRIQFYENLKRHKRTSIALast
1 -7.760[K] KOG4479 Transcription factor e(y)2  ali follow..  14  1MVEDKKKAEEMKMVETEKMVETKKKARRMKHSVNRPPTPDEDDVADGFEKDKVTLREIINVKLVESGEKENLMELVLVECGWKDEMRIACREHVKKDVTVDELIRV--SVPDSVKAELLNRIQNFIVSAAL................................................................................................... 143
2 -5.310[N] COG1334 Uncharacterized flagellar protein FlaG  ali follow..  15  38...............................................................KTTIDPDQYKPKLELLSERLNEEMKRIGTDINFSYNDTI----KGLVVSVKDANGDKVIRE-IPSKEAVELMQ--RMRDVIGIIFDK................................................................................ 117
3 -5.040[S] KOG1894 Uncharacterized conserved protein  ali follow..  13  256..GAPLEFDTTHLPEKQVTLDPNDPSFYEQLHDKYFPNLPVDEKQLHDPSPAENSYHPSVESLHAHEIRFGFKGEIITP-----SQSQTIPVNEGLHHHGDAPFSAGYTLVELAH-----LLRSSFPTQRCIAIQTIGRI.......................................................................................... 386
4 -4.760[T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)  ali follow..  17  24...............................................DTERAKFILENTLQACAKRRVE-----HLLIDLSGVVVVDTMVAHQIFKLIEALNLIGVRSTLSGIRPEIAQTAVQLGIDFSNITIKTNLAQ........................................................................................... 110
5 -4.750[J] COG0244 Ribosomal protein L10  ali follow..  16  1MSKVLEAKQSAVEEIKTKLSASASTVIV-----DYRGLNVGEITDLRKQLRDAGIEFKVYK------------NSLTRRAVEYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKDHEALEIKKVASLEEIKALATLPSREGLLSMLCNVL............................................................................... 143
6 -4.650[R] KOG4700 Uncharacterized homolog of ribosome-binding factor A  ali follow..  10  80......................................STSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDSACRAYWKTTLSAEQNAHMEAVLQRSARHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQ---PCGTTEPTTSSSLCGIDHEALNKQIMEYKRRKDKG.............. 258
7 -4.440[S] COG5388 Uncharacterized protein conserved in bacteria  ali follow..  15  1MRRTAGPASAPNDMLEPRRKMKHRSTIAIFGE--WQRLARGESGSFHVPLR---------ENVDPRKLGRHLCDLFFLETDKRGEL-RLAGTRICTLFGREL---KNIRFLSLWPEQDRPALREMV........................................................................................................ 113
8 -4.340[OR] KOG0010 Ubiquitin-like protein  ali follow..  13  1MAESGESGGPPGSQDSAAGAEGAGAPAAAASAEP-VTVKTPKEKEEFAVPENSSVQQ-FKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH----------DGLTVHLVIKTQNR............................................................................................................... 111
9 -4.290[PT] KOG0498 K+-channel ERG and related proteins, contain PAS/PAC sensor domain  ali follow..  11  395...............ESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIRE--------------------GDPVGEMLFVMRGRLVSATTNGGRSGFFNAVASDFDPQSSSHFPISTRTVQALTEVEALKSVASQFRRLHSKQLQHTFR....... 602
10 -4.230[S] KOG4672 Uncharacterized conserved low complexity protein  ali follow..  17  4........................RSTSSTKSGKFMNPTDQARKEARK--RELKKNKKQRMMVRAAVLKMKDPKQIIRDMEKLDEME--FNPVQQPQLNEKVLKDKRKKLRETFE----RILRLYEKENP------------------DIYKELRKLEVEYEQKRAQLSQYFDAVKNAQHVEVES............................................. 138
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.