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current user: public |
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Query: gi|11497092|ref|NP_051164.1| hypothetical protein (BB_P03) [Borrelia burgdorferi B31], from B.burgdorferi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MSDITKIKQEFDKKVAEIQALMKNPQQDSGLLSNSIDFRDQNLIFSNSGGVCTSSKDKIENYPAKGYPYKRGVKLSFGDGTTELEVEAGGGDDLYGVCSDIDEFSGMATVIPITNNFTGYLTLKKDGQNGVNPGDKLNFNQHGELEKVTGAQKSVNAIALSKAHKLTEDLFIVLASVFGNRAIKG | Last |
1 | -8.160 | [O] KOG0419 Ubiquitin-protein ligase | ali follow.. | 14 | 7 | ...........KRLMWDFKRLQKDPPVGISGAPQDNNIMHNALIFGPEDTPWDGGTFKLTLHFTEDYPNK---IVRFVSRMFHPNIYADGS-----ICLDINQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSYV........................... | 150 |
2 | -8.160 | [O] KOG0417 Ubiquitin-protein ligase | ali follow.. | 15 | 4 | ...........RRILKELKELQRDPPVSCSAGPTGEDMFHQATIMGPNESPYSGGVFLVNIHFPPDYPFK---KVVFRTKVFHPNINSNGN-----ICLDIDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL........................... | 147 |
3 | -7.730 | [O] COG5078 Ubiquitin-protein ligase | ali follow.. | 14 | 1 | MSRAKRIMKEIQAVKDD-----PAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFK---KMQFDTKVYHPNISSVTGA----ICLDINAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASETSNG...................... | 155 |
4 | -7.420 | [O] KOG0421 Ubiquitin-protein ligase | ali follow.. | 18 | 39 | ...........KRLQSELMGLMMGADPGISAFPEEDNIFCKGTITGSKDTVFEGTEYRLSLTFSNDYPFK---KVKFETCCFHPNVDLYGN-----ICLDIDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQEEYRKMVE.................................... | 173 |
5 | -6.790 | [O] KOG0418 Ubiquitin-protein ligase | ali follow.. | 10 | 1 | MSNIAF--NRLQRECKEVVTNSEISETGIMIEILNENLTEKGHIRGPPDTPYAGGMFDLDIKIPDQYPFS---NVKFSTKIWHPNVSSQTGV----ICLDIDQWAASLTLRTVLLSIQALMCTPEPKDPQDAVVAKQYMEKPAVFKATAEYWTTKFAKGAVKNAGYQALV............... | 166 |
6 | -6.400 | [O] KOG0420 Ubiquitin-protein ligase | ali follow.. | 10 | 1 | MIGLFKVKEKQREQAQNATRGGASVKKQSAGELRLHKDISELNLPSSCSISFPNGKDDLMNFEVPVYPHE---KVKCKTKVYHPNIDLEGN-----VCLNIEDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVG.......................... | 168 |
7 | -6.110 | [S] COG4719 Uncharacterized protein conserved in bacteria | ali follow.. | 21 | 40 | ........................................................................................................GATYSVAQVTENGKTTERLVDASGKGALPGSLLQMT----QKVQNVSARSVNGLRLNMRV..................... | 95 |
8 | -5.960 | [O] KOG0424 Ubiquitin-protein ligase | ali follow.. | 16 | 7 | ...........SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMPGKKGTPWEGGLFKLRMLFKDDYPSS---KCKFEPPLFHPNVYPSGT-----VCLSIKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS.......................... | 158 |
9 | -5.650 | [S] COG5471 Uncharacterized conserved protein | ali follow.. | 17 | 29 | ...........................................................................................GDMFAVAV-----TDIAAGSAGTGIAEGVFSIPKLTTEDIAVGKKVYLKDNVVQTDATGSLPYVGVVWAPAA----NGDETVPVKING...... | 107 |
10 | -5.600 | [R] COG3818 Predicted acetyltransferase, GNAT superfamily | ali follow.. | 12 | 13 | EADILALNNEHAAELSWLEAERLSFLLGEAFYARRIGDLEAFIMTFDQEANYDSPNFLWFCERYERFIYVDRVVVAAHARG------RGHARRLYQDLFEHAERAGYMLVT-------CEVNADPPNPASDAFHAALGFTEVGDAVIHGGKKVV............................... | 153 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |