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current user: public |
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Query: gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31], from B.burgdorferi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 | |||||||
# | Score | Template | Links and tools | %id | First | MCGGCLMNGVRKRLSDMSFRMINVFKDPKPLKFYKGTVVKLENDSSYQRVFDKTKYIEFAGVIIDIKPQELAILYDSDMSDIQGYSKLYTYQDLNYEPKDRISIADLVYFEIFSIDSSIGYFTLVLKEFIWTN | Last |
1 | -6.840 | sp|Q14653|IRF3_HUMAN Interferon regulatory factor 3 OS=Homo sapiens GN=IRF3 PE=1 SV=1 | ali follow.. | 6 | 1 | ......MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHDPHKIYEF.................. | 109 |
2 | -6.350 | sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2 | ali | 10 | 3 | .......RRLQEIAQKEAEKAVHQKKEHSKNKCHKARRCHMNRTLEFNRRQKKNIWLE-THIWAKRFHMVKKWGYCLGERPTVKSHRACYR-----AMTNRCLLQDLSYYCCLELKGKEEEILKALSGMC... | 120 |
3 | -6.310 | sp|P51587|BRCA2_HUMAN Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=2 | ali | 9 | 216 | ....................................................SRIWVY---IWAAMECAFPKEFANRCLSPERVLLQLKYRYDTEIDRSRR-----SAIKKIMERDDAAKTLVLCVSDIISLS | 297 |
4 | -6.230 | sp|O14896|IRF6_HUMAN Interferon regulatory factor 6 OS=Homo sapiens GN=IRF6 PE=1 SV=1 | ali follow.. | 6 | 1 | ....MALHPRRVRLKPWLVAQVDSGLYPGLIWLHRSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQEGVDDPDPAKWKAQLRCALNKSREFDGTKEVPMNPVKIYQVCDIPQPQ.............. | 120 |
5 | -6.180 | sp|Q96L15|NAR5_HUMAN(removed signalp:1-22) Ecto-ADP-ribosyltransferase 5 OS=Homo sapiens GN=ART5 PE=2 SV=4 | ali follow.. | 4 | 162 | ...............................................................SSLDKAVAHRFGNATLFSLTTCFGAPIQAFSVFPKEREVLIPPHEVFLVTRFSQDGAQSLVTLWSY.... | 227 |
6 | -6.160 | sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2 | ali | 7 | 3 | ........HNKDMLGNITGS-----EDETRIDMQYPAQHKGQELYSQQDEEQPQGWVSWA--WSFVPAIVSYDDGEEDFVGNDPKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALMMGEPFFD | 144 |
7 | -6.080 | sp|Q7Z4H4|ADM2_HUMAN(removed signalp:1-24) ADM2 OS=Homo sapiens GN=ADM2 PE=2 SV=1 | ali follow.. | 26 | 86 | .CGTCQVQNLSHRLWQLMGP................................................................................................................. | 106 |
8 | -5.800 | sp|Q92985|IRF7_HUMAN Interferon regulatory factor 7 OS=Homo sapiens GN=IRF7 PE=1 SV=2 | ali follow.. | 4 | 1 | MALAPERAAPRVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADPHKVYALSRELC............. | 129 |
9 | -5.500 | sp|P10914|IRF1_HUMAN Interferon regulatory factor 1 OS=Homo sapiens GN=IRF1 PE=1 SV=2 | ali follow.. | 11 | 1 | ......MPITRMRMRPWLEMQINSNQIPGLIWINKEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGRVYRMLPPLTK............... | 117 |
10 | -5.470 | sp|P30047|GFRP_HUMAN GTP cyclohydrolase 1 feedback regulatory protein OS=Homo sapiens GN=GCHFR PE=1 SV=3 | ali follow.. | 10 | 1 | ........................................................MPYLLISTQIRMEVGPTMVGDEQSDPELMQHLGASKRRALGNNFYEYYVDDPPRIVLDKLERRGFRVLSMQTLVWC. | 80 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |