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current user: public |
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Query: gi|11497069|ref|NP_051180.1| hypothetical protein (BB_P19) [Borrelia burgdorferi B31], from B.burgdorferi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 | |||||||
# | Score | Template | Links and tools | %id | First | MDLRLGNNFELVFNNDLSLVDGIDEQKQRFLIFLKTLRGSLSYAPHWGLDYFLLLKLLKINNLHAVKNYFHEISKELNLDLINISTTIQDNKAHISFFFSGDVLNMEFNL | Last |
1 | -6.860 | sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 | ali | 21 | 30 | .......................EEEME---VAKKGLV-------EHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLD.............................. | 76 |
2 | -6.790 | sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2 | ali | 16 | 1 | .............SAELASMELNESSREEMETAKKGLL-------EHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEK.................. | 75 |
3 | -6.580 | sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2 | ali | 15 | 180 | .......................EEEMEVAKKGLV----------EHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKTSR.................. | 238 |
4 | -6.570 | sp|A9Z1Z3|FR1L4_HUMAN Fer-1-like protein 4 OS=Homo sapiens GN=FER1L4 PE=2 SV=1 | ali | 13 | 3 | .DVVLDDENPLTGESDIYVVKGLEHDKQETDVHFNSLTGEGNF--NWRFVFRFDYLPTEREVSVWRRSGPFALEEAEFRQPAVLVLQVWDYDRISANDFLGSL....... | 107 |
5 | -6.550 | sp|Q9Y618|NCOR2_HUMAN Nuclear receptor corepressor 2 OS=Homo sapiens GN=NCOR2 PE=1 SV=2 | ali | 18 | 166 | .........................TEEEMETAKKGLL-------EHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLDEILQQHKLKMEK.................. | 225 |
6 | -6.450 | sp|Q9NRY4|GRLF1_HUMAN Glucocorticoid receptor DNA-binding factor 1 OS=Homo sapiens GN=GRLF1 PE=1 SV=2 | ali | 16 | 217 | .............NNSVLLELPIGLHKKRIELSVLSYHSSFSIRKSRLVHYIVFYSAKRKASLAMLRAFLCEVQDIIPIQLVALTDGAVD-------VLDNDL....... | 300 |
7 | -6.420 | sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2 | ali | 18 | 213 | .............NNSLMLDKIIGEKRRRIQITILSYHSSIGVRKDELVHYILVYSAKRKASMGMLRAFLSEVQDTIPVQLVAVTDSQAD-------FFENEAIKE.... | 299 |
8 | -5.990 | sp|Q9NZM1|MYOF_HUMAN Myoferlin OS=Homo sapiens GN=MYOF PE=1 SV=1 | ali | 17 | 13 | ..............SDIYVIPGNEENKQKTDVHYRSLDGEGNF--NWRFVFPFDYLPAEQLCIVAKKEHFWSIDQTEFRIPPRLIIQIWDNDKFSLDDYLGFL....... | 102 |
9 | -5.920 | sp|Q9UKL0|RCOR1_HUMAN REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=1 | ali follow.. | 18 | 384 | .........................TTEEQLLAVQAIR-------KYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGK.................. | 443 |
10 | -5.920 | sp|Q9BXK5|B2L13_HUMAN Bcl-2-like protein 13 OS=Homo sapiens GN=BCL2L13 PE=1 SV=1 | ali follow.. | 17 | 106 | ...HLGEKVSQELKEPLKALQMLLSQPVTYQAFRECTLETTVHASGWNLLRQMLLELTRRGQLSALLQFGVTYLEDYSAEYI............................ | 194 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255. |