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Query: gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MCGGCLMNGVRKRLSDMSFRMINVFKDPKPLKFYKGTVVKLENDSSYQRVFDKTKYIEFAGVIIDIKPQELAILYDSDMSDIQGYSKLYTYQDLNYEPKDRISIADLVYFEIFSIDSSIGYFTLVLKEFIWTNLast
1 -3.060HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  38......VNAFQQKYPDVKNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKVDDVKLFDWSDRNDYFYVEFDEPDSELLINFDGTLY.. 163
2 -2.760PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  1MCTTNAVN--EKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSD..................................................................................... 46
3 -2.210PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  26  261.CGGCMIDKMQQRMKDLHEAGVPVTNY.......................................................................................................... 288
4 -2.140HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  32........................................................................DMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAEESKKRTHRLCQ...... 86
5 -1.910HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  24.CS-CSMNAR----PMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSM-DCGYQMKQSITGRSYSRHLLYIQTAEVSIYG 156
6 -1.900PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  1......MKTLTFKYLKLFLLAVAMINLTS-----EIEIDDFYDDDNIGGSYYNKSLDLCSRPWAD-HGEDYIRVEYPNGRYSESVYSFTWNWEDRSQYSLRMVYGPGDVSYLDDVWIRGNVLS.......... 132
7 -1.800HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  20.CD--ELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFES-NGIYMQVINDG-----CGDYIAKGKTQNVLCRFT........................................ 114
8 -1.730PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete)  ali follow..  1..................................................................SVLDGFEAVGEKTTTNKMTMTVM-ESSVRFSKGVTEALGCPAYVKLL-VNDKQKKIAV......... 56
9 -1.700PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  9.......EKINEIISPLSRSAFAYYRFTQDVLVNKIKVTPRSRGERVFEGYIEDLWA-IHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXX------------XXXXXXXXXXXYLASTRDYEVTMN 131
10 -1.620PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  2...........HKIKQMIKYIATLL-----LTVLFVACNNGKGQQPSEENEDPKAKEILQGIWLDDETETPLMRIIGDT----------IYYSDAQSAPVYFKILKDTLYTYGKDVTHYQIDKQSEYSFWFHS 108

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.