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Query: gi|11497064|ref|NP_051167.1| hypothetical protein (BB_P06) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGGFNMELFDENYYAKAVANIIGEVKDPIMYKWFSPDQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPEQIKEEVASGDKDKMDKIFEKIEAGLSKLELGDEFSTPMMVIVDPATSLKLVKPYAAAQGAASSCEKWEDVLIQTIKAINNREDVYIETSNLLKHKILIYPLNSELIKFKPSKYMLPTPNEQVDKDSTDVAHSYIDFVLGGLLATRKTILQVNIKQSLast
1 -11.2005wk1_A mol:protein length:352 Major Capsid Protein  ali model follow..  11  129........................................................................TKSSYQKMVIPVFDGAYGRDFRDYEAMRSEMLPAL-------------AEDSEEIEFTLLDDVNDYLWNGDAKLKVDTA-------VWGGLKADASVAAYSLGADTTATEAQVVAELLALLDVLRITNKKSGPFELYISPQIMSNWQKLAG------ANTNGFMNIMAAVRALIPEFSVVE-ADSALQGNQVLCSVVGTRGLHAKIG---MMMSSYQVPRVMHNDPYQFVKWFAAGFQSNNS.......... 341
2 -6.6304pt2_P mol:protein length:287 Encapsulin protein  ali model follow..  14  85...............................................................................................IPIIYKDFLLHWRDIEAARTHNMPLVSAAAGAAALCAQQEDELIFYGDARL------------GYEGLMTANGR--LTVPLGDWTSPGGGFQAIVEATRKLN-EQGHFGPYAVVLSPRLYSQLHRIYEKTGV----------LEIETIRQLASDG--VYQSNRLRGESGVVVSTGRENMDLAVSM---DMVAAYLGASRMNHPFRVLE-ALLLRIKHPDAICTLE.... 279
3 -5.8605jdk_A mol:protein length:137 Switch-activating protein 1  ali model follow..  21  8...................................................LKSYKRKNASLSPSSSPAKAQRTHLSLEEKIKLMRLVVRHKHELVDRKTSEFYAKIARIGYEDEGLAIHTES--ACRNQIISIMRVY--------------EQRLAHRQPGMKTTPEE----------DELDQLCDEWKARLSELQ............................................................................................................................... 127
4 -5.6405ngw_A mol:protein length:389 OpGH99A  ali model follow..  11  64SGTYTAA--NTDQFPTHIRQANKAGINFFLFDLVSSQRYNNELAGFTPDSIVKYAFNYNYGPLGINNNNPVDSTTDETTNTLDPKEIVFQQDFLNI---ADLAENNTNYYRLDGKPVVYILNAQNLAANDSPAVFNRYIIGMQPQWQPPLRYDFRFVGAVNTYMQLNENNSYERILYFDKMVYGAWSYSQEALGR----SEFNLEYIPTISPSSNYKLQNPNNQNYIFEKNEKLFRSVCNAARGAVGESKMVLLESFN----------------NWNIGTQIEESNELKVDGVTPAYGDQYLKILKEEFKVAK........... 383
5 -5.4604exp_A mol:protein length:177 Interleukin-34  ali model follow..  18  1..................................................................NENLEIWTLTQDKECDLTGYLRGKLQYKNRLQYMKHYF--------------PINYRIAVPYEGVLRVAN-------ITRLQKAHVSERELRYLWVLVSLNESVMDVLLEGHPSEVQTLLENVQRSLMDVEIGPHVEAVLSLLSTPGLSLKLVRPKALLDNCQSPILKWQD....................................................................................... 170
6 -5.4201xpx_A mol:protein length:163 Protein prospero  ali model follow..  14  12..............................................................................................HLRKAKLMFFWVRYPSSAVLKMYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYAR----------------QAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEVPQNFRF--VVESTLREFFRAIQGGKDTEQSWKKSIYKIISRMDDPVPEYFKSPNFLEQ.............................................................. 161
7 -5.3704dkd_A mol:protein length:185 Interleukin-34  ali model follow..  15  1...............................................................AGSNEPLEMWPLTQNEECTVTGFLRDKLQYRSRLQYMKHYF--------------PINYKISVPYEGVFRIAN-------VTRLQRAQVSERELRYLWVLVSLSESVQDVLLEGHPSEVETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNC................................................................................................ 151
8 -5.1404dkc_A mol:protein length:190 Interleukin-34  ali model follow..  15  1...............................................................AGSNEPLEMWPLTQNEECTVTGFLRDKLQYRSRLQYMKHYF--------------PINYKISVPYEGVFRIAN-------VTRLQRAQVSERELRYLWVLVSLSESVQDVLLEGHPSEVETLLLNVQQGLTDVEVSPKVESVLSLLNAPGPNLKLVRPKALLDNC................................................................................................ 151
9 -5.0902lmd_A mol:protein length:174 Prospero homeobox protein 1  ali model follow..  14  15..............................................................................................HLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQMEKYAR----------------QAINDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLE--VAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNCLQE.............................................................. 164
10 -5.0302z5c_B mol:protein length:149 Uncharacterized protein YLR021W  ali model follow..  13  28......................................................................YVQATHFNNTIL--GEMDSTYEVSSKGLNHLSDYQVVTKLGDSADPKVP------VVCVQIAELYRRVILPEVSGTMAQDNMQFSLLISMSSKI-WRATKEQSADDNDFGKLVFVLKCIKDMYAK................................................................................................................................. 149

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24