current user: public

If you have questions about the server, please let us know.

Query: gi|11497094|ref|NP_051166.1| hypothetical protein (BB_P05) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MGDTTQLVKEYQEKRSKLEKFMKNPQHDASLLSNSNEFRDKNVEFFASGGTRTSKFDKLENHPFLGYPYKRGVKRVIQEAQDNQSHYEPHVEAGGGEDLYGICIDIDEFSKTATIVPITNNFEGYLVAKDSTVKVKDKLIFNKDGALEKVTGAPNKATINATALTDAKQISNEVYLVKVAVFGNKAMSRNLast
1 -9.3805irx_E mol:protein length:75 Tau-theraphotoxin-Hs1a  ali model follow..  16  15......................................................................................................CCDLDNFYCPMEFIPHCKKYKPYVPVTTNCAKEGEVCGWGSK.............................................. 56
2 -8.5703we5_A mol:protein length:173 Ubiquitin conjugating enzyme  ali model follow..  13  21...........RRLAKELREIQSEGCPVGITLVDASDFSKWLFTIEVMGNSQQGEAYTLQFRFDAQYPIS---AVQFVVTDGKEAPVHPHVYSNGH-----ICASISEWSPVLSVIAVCVTLQSMLASCKKKERPADNDRYVRT.............................................. 150
3 -7.3605wk1_X mol:protein length:148 Capsid Stabilizing Protein  ali model follow..  13  34..................................................LARAAGDAIDVTAKASTTYGNEFLICDDQPQTLGGGTDVAVTAGD--------------TVQAISVLPGQYVLLSFAATQNVTTKGAAVASNGDGNFKLGNPATEQTFAVT---EEIINVTTAGTLVLCRAI........ 148
4 -7.1402yt7_A mol:protein length:101 Amyloid beta A4 precursor protein-binding family A member 3  ali model follow..  18  2.............................................................................SSGSSGDNCREVHLEKRRGEGL-GVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLS................... 94
5 -6.9401luz_A mol:protein length:88 Protein K3  ali model follow..  12  6...........................................................YSLPNAGDVIKGRVYEK-----------------------YALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKLVGKTVKV----KVIRVDYTKGYIDVNYKRMCR........................ 86
6 -6.9001o78_A mol:protein length:84 BIOTIN CARBOXYL CARRIER PROTEIN OF METHYLMALONYL-COA CARBOXYL-TRANSFERASE  ali model follow..  17  21....................................................................................................................PLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG.......... 84
7 -6.8805e7f_G mol:protein length:174 Major structural protein 1  ali model follow..  13  1MAELTKITRGMQNGAETINDNLNKLNTITVQKTGDETIAGKKTFSGDVSVDGDFTMKKFADSYVAFFANKGGNTVTFTAPWDCTAEVELFYHGSGGEWEIGITTPTNGHDNQAISMPTKAIYSG--------LKKGLQYTFDIRDANGRGGGPKHPMMI............................... 167
8 -6.7702ejm_A mol:protein length:99 Methylcrotonoyl-CoA carboxylase subunit alpha  ali model follow..  19  13.............................................................................................................TQGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFE.......... 83
9 -6.4101dcz_A mol:protein length:77 TRANSCARBOXYLASE 1.3S SUBUNIT  ali model follow..  17  14....................................................................................................................PLAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG.......... 77
10 -6.3901x45_A mol:protein length:98 amyloid beta (A4) precursor protein-binding, family A, member 1 (X11)  ali model follow..  16  2.................................................................................SSGSSGDVFIEKQKGEIL-GVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLN................... 90

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24