current user: public

If you have questions about the server, please let us know.

Query: gi|11497095|ref|NP_051172.1| hypothetical protein (BB_P11) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370
# Score Template Links and tools%idFirst MPQDTISVSLLDSRIQASRPNYYNPLLVYKTAKIKVNKDAASYKILNLTVNNYEKQIETLEKENGNGEDQFGKEKTLLKTAMSNFFNSSEESLKSADLFIYKDKPEELKNYLKVHRHTFVVLINTEGDASDDGLKIYKDDYNKFKKPSTFFVFSTKEQEIKELFKDKGNTEKERNIAVYSNNKDNLHLKFISQYLHQASIFHAVNPYGMPLAATPLVDDTVIGKLRTAKINFYSLLNETGLDGVPAFKEGVDLAGGAIDEQFTYHYIKNEAIIELIRIWNKNNRQNSKLSALQLSGARDNAYTSAIECLLKRFVDRGLIIEYKNLRLTLSPTPQLKLELSVNITYNFSINAVALVITTQDIVDYQNSLSALast
1 -6.4105ok9_A mol:protein length:246 14-3-3 protein sigma,Heat shock protein beta-6  ali model follow..  14  6....................................RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSAAAGPEVREYREKVETELQGVCDTVLGLLDS-----------HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEA-------MDISKKEMPPTNPIRLGLALNFSVFHYEIANSP-EEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRLWTGSGSLRRASAPL.............................................................................. 246
2 -6.4105yqg_A mol:protein length:252 14-3-3 protein eta  ali model follow..  12  10....................................REQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLALLDK---------FLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAF--------ISKEHMQPTHPIRLGLALNFSVFYYEIQNAP-EQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRLWTSDQQDEEA.................................................................................. 248
3 -6.3905om0_A mol:protein length:248 14-3-3 protein sigma,Zinc finger protein GLI1  ali model follow..  13  6....................................RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEAGPEVREYREKVETELQGVCDTVLGLLDS-----------HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEA-------MDISKKEMPPTNPIRLGLALNFSVFHYEIANSP--EAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRLWTGSGSLRRA.................................................................................. 242
4 -6.3503lw1_A mol:protein length:253 14-3-3 protein sigma  ali model follow..  14  8....................................RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDS-----------HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEA-------MDISKKEMPPTNPIRLGLALNFSVFHYEIANSP--EAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRLWTADNAGEEGGEAPQEPQS......................................................................... 253
5 -6.2505oma_A mol:protein length:248 14-3-3 protein sigma,Steroidogenic acute regulatory protein, mitochondrial  ali model follow..  13  6....................................RASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSAAAGPEVREYREKVETELQGVCDTVLGLLDS-----------HLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEA-------MDISKKEMPPTNPIRLGLALNFSVFHYEIANSP-EEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRLWTGSGSLRRS.................................................................................. 242
6 -6.0505lho_A mol:protein length:253 KLTH0G14146p  ali model follow..  15  5....................................REDSVYLAKLAEQAERYEEMVDSMKAVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEEAKDKSEHQVKLIRDYRSKIETE-KICDDILSVLDT-----------HLIPSATTGESKVFYYKMKGDYHRYLAEFSSGEVRDKATNASLEAYKTAS-------EIATTELPPTHPIRLGLALNFSVFYYEIQNSP-DKACHLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRLWTSDMSEAGQDEQQPAEGAQE....................................................................... 253
7 -6.0002c63_A mol:protein length:247 14-3-3 PROTEIN ETA  ali model follow..  12  1................................SMGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSWRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDK---------FLIKNCNDFQYESKVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAF--------ISKEQMQPTHPIRLGLALNFSVFYYEIQNAP--QACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRLWTSDQQDEEA.................................................................................. 243
8 -5.9404o46_A mol:protein length:256 14-3-3 protein gamma  ali model follow..  12  1.................................MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDN---------YLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEA-------HEISKEHMQPTHPIRLGLALNYSVFYYEIQNAP-EQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRLWTSDQQDDDG.................................................................................. 242
9 -5.9305by9_A mol:protein length:256 14-3-3 protein  ali model follow..  15  2...............................AEAFTREDYVFMAQLNENAERYDEMVETMRKISGMEGELSDKERNLLSVAYKNVIGPRRAAWRIVSSIEAKEKGQKIEKELSDICNDILKLLQEQ-------------------------FVPRSTNADAKVFYYKMQGDYYRYLAEYSSGEDKEKIAGSALNAYNSAFEIS--------QQLPPTHPIRLGLALNFSVFYYEILASP-DRACELARKAFDAAITDLDKLTEESYKDSTLIMQLLRLWVTDSAGDDNAEGGGGGGGGGG...................................................................... 256
10 -5.9204j6s_A mol:protein length:255 14-3-3 protein gamma  ali model follow..  12  5.............................ASVGLVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDN---------YLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAH--------ISKEHMQPTHPIRLGLALNYSVFYYEIQNAP-EQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRLWTSDQQDDDG.................................................................................. 250

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.