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Query: gi|11497101|ref|NP_051178.1| hypothetical protein (BB_P17) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLLLQYDFKIEFYNVDTSKKSPDGIPFAEEIPKIIINTQDGIHIDISISNVYSNIHTISSKQAKVVLWNLPLDFTDDIKFGDIVKIYYKKFAHEKNFDFIMAGTLGPPMSTDYPGGDFSVDLDVRLLTKSNFFNRELAGKEGKNFKGKTVKEAIESVFPNRNILNMDEKDCLKIIDKDIYATTPKEFIDKIKGTYVHNVIADIGTGLRGYECYLIFTNYIKKGENVHYEALEDYGLEFIPQQEITLGTTLKKNLIFWNAKTFFTHKLNVGDKVSFIDGLGKMIKTTIKETSARLSNTGECSLILKLEDDSNTKRKKLast
1 -5.9604az8_A mol:protein length:240 CHAPERONE PROTEIN CAF1M  ali model follow..  12  21..................................IIYPLDAAGVMVSVKNTQDYPVLIQSKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLK-CVKGIPPKDEDIWVDDATN------KQKFNPDKDKDTNDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENL-GGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQG................................................................................. 228
2 -5.5101p5u_A mol:protein length:235 Chaperone protein Caf1M  ali model follow..  13  21..................................IIYPLDAAGVMVSVKNTQDYPVLIQSKESEDPFVVTPPLFRLDAKQQNSLRIAQAGGVFPRDKESLKLCVKGIPPKDEDIWVD-----------DATNKQKFNPDKDVGVFVQFAINNCIKLLVRPNELKGTPIQFAENL-GGKLIAENPSPFYMNIGELTFGGKSIPSHYIPPKSTWAFDLPKGLAGARNVSWRIINDQG................................................................................. 223
3 -5.4005ikf_B mol:protein length:155 Cryptic loci regulator protein 1  ali model follow..  22  18............................................NIASSILYSTASFSRSKPDRPRL-NLSLELQNELNKGQLKKQFLRNLADWNNLSLVSSKFPSLPITNLRPDGSF----------KHRRFNEEIAYNR------QTLEKAIKQLLSPDKVIQLREQNGVAVNGRVCYPTRNKH.................................................................................................................................. 150
4 -5.2301wru_A mol:protein length:379 43 kDa tail protein  ali model follow..  10  3...............................NTVTLRA-DGRLFTGWTSVSVTRSIESVAGYFELGVNVPPGTDLSGLAPGKKFTLEI-------GGQIVCTGYID---SRRRQMTADSMKITVAGRDKTADLIDCAAVYSGGQWKNRTLEQIARDLCAPYGVWELSDKESSAAFPG--HSETVYEALVRASRARGVLMTSN.................................................................................................................. 167
5 -5.0005b7e_A mol:protein length:526 Blue copper oxidase CueO  ali model follow..  15  47....RIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTE-----------------------------TTLHWHGLEVPGEVD-------GGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQAMGLAGLVVIEDDEILKLMLPKQIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDT-----------LLTNGAIY-----------------PQHAAP-RGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKP..... 292
6 -5.0001p6x_A mol:protein length:334 Thymidine kinase  ali model follow..  11  1...........................GSHMVTIVRIYLDG-VYGIGKSTTGRVMASAASGGSPTLYFPEPMAYWRTLFETDVISGIYDLITAHYQSRFTTCTLFGGNSLQRGTQPDLTLVFDRHPVASTVCFPAARYLLGDMSMC-MAMVATLPREPQGGNIVVTTEEHIRRLRTRA-GEQIDITLIATLRNVYFMLVRDGWGELPTSCGAYKHRATQMDAFQERVSPELGDTLFALFKTQELLDDRGVILEVHAWALDALMLKLRNL-DLSGTPRQCAAVVESLLPLMSSTLSDFDSASALERAARTFN..... 329
7 -4.9001v47_A mol:protein length:349 ATP sulfurylase  ali model follow..  11  1..........................MVETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVWTIPILLQFREKPRHVAEAYELDLEALARAVFGTDSETHPGVARLYGKGPYALAGRVEVLKPRPRTPLEKTPEEVRAFFRQRGWRKV-VAFQTRNAPHRAHEYLIRLVHPILGAKKPDDFPTEVIVEAYQALIRDFALVRKNFGATHFLVGRDHAGVGDFYDPLPPLGIEIVKVGAVFHCPLCG--------GIASERTCPEGHREKRTAISMTKVRALLRE........................... 328
8 -4.8801mzz_A mol:protein length:334 Copper-containing nitrite reductase  ali model follow..  10  1.........VDLSNLPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEK--EVQLDEDAYLQAMTFDIP---LMIVHEGDYVELTLINMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHGPMIPWHVVSGTAGCIMVLPRDGLKDHEG--KPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFN----------------GAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLGGHGDLVWETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGV.... 294
9 -4.8801aoz_A mol:protein length:552 ASCORBATE OXIDASE  ali model follow..  3..IRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEG---------------------------VVIHWHGILQRGT----ADGTASISQCAINPGETFFYNFTVD--PGTFFYHGHLGMQRSAGLYGSLIVDP-----PQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTIL---LNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAINHQLLVVEADGNYVQ-PFYTSDIDIYSGESYSVLITTDQNPS..... 273
10 -4.8702vmj_A mol:protein length:329 DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE  ali model follow..  10  33..VVEFTMTIE-MVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMP--NVDFHGATGALGGAKLTNVNPGEQATLRFK-HCTPHPFMSGTLMVLPRDGLKDPQGKPLHYDRAYTIGEFDLYIPKGPDGK-------YKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWVWETGKFANPPQRDLETWFIRGGSAGAALYTFKQPGVYAYLNHNLIEAFELG.............................................. 302

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24