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Query: gi|11497090|ref|NP_051162.1| hypothetical protein (BB_P01) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCDLRKTKLIDKISSLELYKYSIFFRNYIENVAEDCLKNGLILESAAHNVSEVELARLKVQLKNALLNCIISYRFHGIGYVLVKTKDTLIDLEQPVNIELPIGFEYLDYEYVRDLGVDFDHITYKVKSNNKNNSLDAVKIHKSRLIIYENFDYILKRYVPCYTESFLLDIYLFEKIYVEIERRIENHNFLFYKDESLVQLQDALSSATTSLSALTQSNNDRGSGILSSFLRKQNSNNHSKDISNLRNLNDSLSQELARLKSNLNNEGMFYTATPSASLEVIKYDLSYLKEALALIKAKIGADTKEPLTRSFNEQAKGLGNDGKGDRSNYYDFLKGVQEQVENSCNLKLTKYFGLDMKFNSLIMLSEEQKVERDIKLIELYSKYNQLIQSSSFNNEELAMLKEKLFSFLast
1 -24.200PF06381.11; Q11J16_CHESB/39-389; Protein of unknown function (DUF1073 topsan)  ali follow..  15  4...............VAAYRTSWLPRKIIDIPALDSCRAWRAWQAKNPQIEKLEAEETRLGVQGKVLEVRKKARLFGGAAIYFDLGDDA-SQPLNVEKVKAGGIRFLTPRQLQPCEIESDPLSPLYGRPKVSGTTARVKIHPSRLAIFIGNELP--------------------------DRDITSSASYAWGDSVLTSVLEAVKQADSTSANIASLIFEANVDVVTM--------EGLMAYVGTPDGERKVTDRYRIAATGKSINRMLIL-DGKEKYERKSASFTNLHELMDRFFQNVSGAADIPMTRLFGMSPGGLNSTGEADLRNYYDRIASGQTLEMQPALANLDECLDIHYVWNPLWQMSEKEKAEIFKAKSDAAR.......................... 350
2 -5.540PF07891.12; B9T740_RICCO/513-763; Protein of unknown function (DUF1666 topsan)  ali follow..  14  2..........................................................................................DLEMIYVGQMCLSWEILHWQYEKALEIWDSDPYGIRCYNEVAGEFQQFQVLMQRFIENEPFE---GPRVQNYVKN-LLQVPVIREDSIKDKRARRIAAKDDDNAITSDKLVEIMEESIRIFWRFVRADKDAHTVIQKSRRGTQIEPQDPTELELLTEVRTSLQKKEKKLKEKLRSGNCILKKFQKNQEESSSDQVLYF---FSQVDMKL............................................................................................................ 209
3 -5.190PF10824.8; Q5Z2J0_NOCFA/9-106; Excreted virulence factor EspC, type VII ESX diderm  ali follow..  17  10..................................................................................................................................................................................................EKVGEVGKYLYELAQALQAALDSAAQDVSSLTDGSWTGDHATDFANAWADLRTSGDQIMAALTELAEKLGVTAHTYQARDENNAGAIQ............................................................................................................................. 97
4 -5.090PF14917.6; G1QGC2_MYOLU/270-388; Coiled coil protein 74, C terminal  ali follow..  21  17.................................................................................................................................................................................................................................................IRQLWNANLLQAQELQHLKSLLERTRKSSRAASEEAA-----SSPNDQEAMQLSKVPTKGVSRKCLILSPIPVSERA-------------ILPALKQTLKNNFAERQKR......................................................... 108
5 -5.080PF05113.13; Q9S0F4_BORBU/1-311; Protein of unknown function (DUF693 topsan)  ali follow..  15  3.....................................................................LLQYDFKIEFYNVDTSKKSIINTQDGIHIDISISNVYSNIHTISSKQAKVVLWNLPLDFTDDIKFGDIVKIYYKKFAHEKNFDFIMAGTPPMSTDYPGGDFSVDLDVRLLTKSNFFNRKLA-GKNFKGKTVQEAIESVFPNRNILNMDEKDCLKIIDKDIYATTPKEFIDK-IADIGTGLRGYECYLIFTNYIKKGENVHYEALEDYGLEFIPQQ-----------EITLGTTLKKNLI--WNAKTFFTHKLNVGDKVSFIDGLGKMIKTTIKETSARLSNTGECSLILK................................................ 305
6 -4.960PF05136.13; A9C2C6_DELAS/51-407; Phage portal protein, lambda family  ali follow..  7  18..AINAALQVLRDRSSDSARNDWSSESIIQKWTTTLVGIAITPRFRRIKDKERR-QEINDLWADFVREADADGVLDAYGMQTLAVRSWIERGETSDGLAVPMQVQLLEADMV-----PNFDADTYSGLPVNNKIRSGIEFDNGKKIAY----WVYKEHPGDGVWS--------GTPAATALVRVPAEDMFHMFEPKRIGARRGVPTLAPILAKQRNILDQKIANLFVAFISRSLPSLDPTDPNHQALTGLESEIDGEAAPLLPMKPGLMQELEDGQTVEFAKPP-DYMRTSHLGTTAGTGV-PYELAVGDIAN-------------VSDRTLRVVINE..................................................................... 348
7 -4.780PF03957.13; F7DYE9_MONDO/5-254; Jun-like transcription factor  ali follow..  18  5..............................................................................................................................................................................................FYDDALNAAFVQPYSHAKVLKQSLTLNLADPVSSLKPHLRNKNPDLLTSPDVGLLKLASPELERLI------IQSSNGLITTTPTPT---------------QFLCPKNVTDEQEGFAEGFVRALAELHSQNT.................................................................................... 122
8 -4.780PF06705.11; E2RTU7_GIAIC/25-271; SF-assemblin/beta giardin  ali follow..  11  33.................................................................................................................................................................................................DTRVKMIKDAIAHLDRLIQTESRKRQASFEDIREEVMYLTIKEEIDTMAANFRKSLAEMGDTLNNVETNLQNQIAIHNDAIAALRKEALKSLNDLETGIA-TENAERKKMYDQLNEKVAEGFARISAAIEKETIARERAVSAATTEALTNTKLVEKCVNEQL-AIQEEIDREKAERKEAEDKIVNTLEDVVSKIQGG................. 241
9 -4.590PF14282.6; D4GJV4_PANAM/12-109; FlxA-like protein  ali follow..  19  5.......................................................................................................................................................................................................................................SSDTTNSSDTASQIASLNKQISRLNDQLKS-LGDDKTMTTEQKKKQQDTIKAQIQVLEAQIQQLQRKEQQKAEAKQAQKEGNTASADG........................................................................................ 91
10 -4.590PF04849.13; W5LGB1_ASTMX/38-342; HAP1 N-terminal conserved region  ali follow..  14  4......................................................................................................................................LPRYTLRADHVFGYDHDDWLVGQVTKTYHDIEAVTHLLEEKLAARIGQSLLKQN-LEIAREEIAQLRHELSMRDELLNLYASTEEIESAMESRSPIRRNESSSSQQKLKGLEEENLKLRTEADELTSETTI----YEEQEQQLMMVCVEELSSVNKQVVDLSEELARKVEDSLRQ--QEEISSLLGQ-------------------VVDLQQRCKGLMRENEELTQHLSATRENQSQLKTELKDLQERNSESEDMLQEAREEIKNLRNK.... 305
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.