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Query: gi|11497065|ref|NP_051168.1| hypothetical protein (BB_P07) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKMSEQESLQAQVAGEEELLVTKLHSEVLLLLGIDKFALSRQNFLLHLSLLQAILVTRGIDASSLTYEQIFLLTFYHMGCQLRKQGVVREFEFDRIKKEKFNELELDYYPSSSGGEEGGEGSCGSNKNFCSQLDAFLEKLKRETSTPSCVGVVLast
1 -5.850d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma, unidentified species [TaxId: 2093]}  ali model 3D-neighbors follow..  15  1..LSGRLNWQALAGLKASGAEQNLYNVFNAVFEGTKYVLYEKPKHLK-NLYAQV---------VLPDDVIKEIFNPLIDLSTTQWGVSPAFAIENTETHKILFGEIKRQDGWVEGKDPSAGRGNAHERSCKLFTPGLLKAYRTIGG....... 134
2 -5.630d2j8ba_ g.7.1.3 (A:) CD59 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  5...........................................................................................................YNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHC.... 46
3 -5.120d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.......................................................................FVAHVESTCLLDDAGTPKDFTYCIS----FNKDLLTCWDPEENKMAPCNSLANVLSQHLNQKDTLMQRLNGLQN........ 70
4 -5.020d1wjza1 a.2.3.1 (A:8-88) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  13  11..........................................................................WYSI-------GADPSANMSDLKQ-KYQKLILLYHPDKQSADVPAGTMEECMQKF-QAWKILGNEETKK.......... 75
5 -4.920d1icfi_ g.28.1.1 (I:) Class II MHC associated p41 invariant chain fragment {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  7  5.............................................................................................QEEVSHIPAVHPGSFRPKCDENGNYLPLQCYGSIGYCWCVFPNGTEVPNTRSRGH..... 59
6 -4.740d3djcc2 c.55.1.0 (C:123-256) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  11  6...........................................................IDFGTATTFCAISHKKAYLGGAILP-GLRLSADALSKNTAKLPSVEIIKTESVVGRSTIESIQSGVYYGVLGACKELIQRIHHEAFNGDQILIL 98
7 -4.620d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  105.........................................................RRIDIRLIPKDQYYCGVLYFTG-NMRAHALEKGFTINE-EKDIFDYIQWKYREPKDRSE..................................... 187
8 -4.620d1rmja1 g.28.1.1 (A:1-80) Insulin-like growth factor binding protein 6 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  3...............................................................................CRRHLDSVL-----QQLQTEVYRGAQTLYVPNCDHRGFYRKRQCGQRRGPCWCVDR-LPGSPDGNGSSSC.... 74
9 -4.600d2m2ua_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}  ali model 3D-neighbors follow..  19  97.........................................................YQLDLFTALAEEKPYAIFHFTGYKLNQYGLFKNQTLVPLEKELIKELGFTYRIPKKR....................................... 173
10 -4.600d2h3gx2 c.55.1.0 (X:123-254) automated matches {Bacillus anthracis [TaxId: 198094]}  ali model 3D-neighbors follow..  16  6...........................................................VDFGTATTYCYINEEKHYMGGVITP-GIMISAEALYSRAAKLPRIEITKPSSVVGKNTVSAMQSGILYGYVGQVEGIVKRMKEEAKQEPKV... 95
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.