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Query: gi|11497093|ref|NP_051165.1| hypothetical protein (BB_P04) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGGLast
1 -8.360d4le5a2 d.130.1.0 (A:118-243) automated matches {Campylobacter jejuni [TaxId: 195099]}  ali model 3D-neighbors follow..  13  2.....................................................................................................................................ETGAGDQMFGFASC-----EAEEYMPAAISYARMLCDRVYAYAKANPHELGVDIKTQNFENCKPQSIHTIVVS----APCVESMKIEDLRSLVMKLILDSNLPKELFDPNKTRILINPTG. 123
2 -8.310d2hj2a2 d.130.1.1 (A:126-251) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1................................................................................................................................NEEDIGAGDQGLMFGYATD-----ETEECMPLTIVLAHKLNAKLAELRRNGTLPWDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSG. 123
3 -6.410d1rg8a1 b.42.1.1 (A:1-137) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  8.....................................................................................................................YKKPKLLYCSNGGHFLRILPDGTVDG----TRDRSDQHIQLQLSAESVGEVYIK--STETGQYLAMDTDGLLRLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLPV............... 137
4 -6.160d4dsda_ d.98.2.0 (A:) automated matches {Bacteroides ovatus [TaxId: 411476]}  ali model 3D-neighbors follow..  12  2....................................................................................................................................................DVITKDMNQLPINSNFTKPQVAHEVVLMDGTEIDFDSKGNWEEVSAKKGQTVPVSIVPGFAVNYLKAHNFVNEGVTKVERDRKGYEIEL----STGLSFKFDKKG. 121
5 -5.710d1wh1a1 b.36.1.1 (A:8-118) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  15.................................................................................................................................EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRI-IQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWMDDD........................... 111
6 -5.650d3c9za2 b.42.2.0 (A:129-257) automated matches {Sambucus nigra [TaxId: 4202]}  ali model 3D-neighbors follow..  9  13..............................................................................................................................................EMCLQSNGENNGVWMEDCEAT-QQWALYGDRTIRVNSTRGLCNSKDLIIILKCQGLPSQRWFFNSDGAIVNPKSRLVMDVRASNVSLREIIIFPATGNPNQQWVTQVLP... 129
7 -5.590d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}  ali model 3D-neighbors follow..  13  167........................................................................................................................ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVADCTAIYVVTNGGMFLPPPTGVVPANVVRLEVGKPG............. 298
8 -5.520d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  17.....................................................................................................................LIRTYQLYSRTSGKHVQVLANKRINAM----EDGDPFAKLIVETDTFGSRVRVR--GAETGLYICMNKKGKLEIVLENNYTALQNAKYEGWY-MAFTRKGRPRKGSKTRQHQREVHFMK.................. 143
9 -5.500d4d6ga2 b.24.2.0 (A:839-1003) automated matches {Streptococcus pneumoniae [TaxId: 406556]}  ali model 3D-neighbors follow..  15  4..................................................................................................DIFAQKLDNFVYNYKVNENVKQTGKLKFNSLEMNVEFEPERISNGLKVNLNNFRTNKDSL--SNAQDANQAKKLPQLTKKGAIKWIEEHYIKDTQFGEVTKIVLRGIDKLPTIHSLSGTNNSYDQPSLNFDQKNHMVTITINSNGNLEFELH.... 164
10 -5.420d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  14  28..........................................................................................................................................................ELPVSLSVQVRGELAAEEVEVLRLSALR----GLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSGADGSVVTVSGTLYGPQLSQKIVQING. 129
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.