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Query: gi|11497100|ref|NP_051177.1| hypothetical protein (BB_P16) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTSNKKIANNAANKIDINNKITNNHDIEKKKIKEKINDIEKKEIREITRIIRDVITQIFALFGADNFLVLFPRMDLKGFGYIPQLFFIKPKNELITRTYNTSCSKRPVINYYDRKAEYVSYNPVMTGEHISLNGGILTSLYKDMISLLKMTVFGNTMLRFDAHLVKEQLANRIQAQVPFSIYSPTFGLKELAVITSLSFKDTPFIDEVEVSLSIEIVKTFALEKYKGLast
1 -5.620d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  14......................................................................................FGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVST........... 155
2 -5.460d4jxqa_ d.108.1.0 (A:) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  14  1...............................MTATLRDAVAADLRSITEIYRESVLNGVATYEETSEAEMALRFSTITGNGYPYVVALDERGAVIGYAYASAFRNRTAYRFLVEDSIYLSPE--------ARGKGIGKALLSELVGRCTALGFRQMIAVIGGHPSSIALHRA-------------LGFELQGLMKATGFKHGRWLDTAFMQRPLG............ 166
3 -5.450d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}  ali model 3D-neighbors follow..  12  9....SKLHDVGFSHLPPNQTKSASYTLPNNPKLKGLRPMTGKDVSTVLSLLYKYQERIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIITDYFSYYLLPFTVLDHDELGIAYLFYYASDSFEKPNYK-KRLNELITDALITSKKFVFNCLTCQDNTYFLKDCKFGSGDGFLNYYLFN............................................ 197
4 -5.450d5t7da_ d.108.1.0 (A:) automated matches {Streptomyces hygroscopicus [TaxId: 1912]}  ali model 3D-neighbors follow..  13  2..................................DIRRATEADMPAVCTIVNHYIETSTVNFRTEPQEPQEWTDDLVRLRERYPWLVAEVDGEVAGIAYAGPWKARNAYDWTAESTVYVSPR--------HQRTGLGSTLYTHLLKSLEAQGFKSVVAVIGLNDPSVRMHEA-------------LGYAPRGMLRAAGFKHGNWHDVGFWQLDFS............ 162
5 -5.190d2j8ma_ d.108.1.1 (A:) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  3..................................SIRDAGVADLPGILAIYNDAVGNTTAIWNETDLANRQAWFDARARQGYPILVASDAAGEVLGYASYGDWRPFEGFRGTVEHSVYVRDDQRGKG----LGVQLLQALIERARAQGLHVMVAAIESGNAASIGLHR----------------RLGFEISGQMPQVGQKFGRWLDLTFMQLNLD............ 165
6 -5.120d1rwra_ b.80.1.11 (A:) Filamentous hemagglutinin FhaB, secretion domain {Bordetella pertussis [TaxId: 520]}  ali model 3D-neighbors follow..  15  10.................................................................................................QVLQGGNKVPVVNIADPNSGGVSHN-KFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRL----TLEVYGKGADLIIANISVNGLSTLNASNLTLT.............. 125
7 -5.120d5jtfa_ d.108.1.0 (A:) automated matches {Pseudomonas putida [TaxId: 160488]}  ali model 3D-neighbors follow..  14  3..................................DIRVARPEDAEEIQIIYAPIVLNTAISFEEAVPSVEQMRERISTTLQTYPYLVAVREGRVVGYAYASQHRARAAYRWAVDVTVYVAEG--------QRRSGIARQLYDVLLPVLKRLGYRSAYAGIALNEGSVGLHER-------------LGFQHIGTFPQVGFKLDAWHDVGYWRFDFG............ 163
8 -5.110d2v9tb_ c.10.2.0 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  21............................................KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELLFEGLFSLQLLLLNANKINCLRVDAFQDL-------------HNLNLLSLYDNKLQTIAKGT------FSPLRAIQTMHLAQNPFICDCHLKWLADYLHT........ 179
9 -5.020d1or7a2 a.177.1.1 (A:1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  25...........................................................................................................LVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQ....................................................... 89
10 -4.920d1qmea4 e.3.1.1 (A:264-620) Penicillin-binding protein 2x (pbp-2x), transpeptidase domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  9  1.....................TISSPLQSFMETQMDAFQEKVKGKYMTATLVSAKTEILATTQRPTF-------DADTKEGITE------RDILYQSNYEPGSTMKVMMLAAAIDNNTFPGGEVFNSSELKIADATIRDWDVNEGLTGGRMMTFSQGFAHSSNVGMTLLEQKMGDATWLD-YLNRFKFGVPTRFNIVNIAQSSFGQGISVT-QTQMIRAFTAIANDG 209
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.