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Query: gi|11497102|ref|NP_051179.1| hypothetical protein (BB_P18) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNEDYEIYRMNQRLYGQALAQEDLKNWIYSNIFIIKIGTVKEFKHQTQEAIVTIPEFEDLEIHTKNISNISLELSKGDCVLLLQSSINIFDKNNDIHFDKHHFYILSAISPKTLNLISDTVKIRANNKIEIANQTTSLKKILDNIVSAINGIKIIGDSVIDESSLKIATAQINSDINSLFKLast
1 -6.940d1qfxa_ c.60.1.2 (A:) Phytase (myo-inositol-hexakisphosphate-3-phosphohydrolase) {Aspergillus niger [TaxId: 5061]}  ali model 3D-neighbors follow..  11  233....FELNARPFSNWINAFTQDEWVSFGYVEDLNYYYCAGPGDKNMAAVGAVYANALTLLNQGPKEAGSLFFNFAHDTNITPILAALGVLIPNEDDRVAFGNPYSIGNIVPMGGHLTIERLSCQATAL---SDEGTYVRLVLNEAVLPFNDCTSGPGYSCPLANYTSILNKNLPDYTTT.. 408
2 -6.100d2j6ba1 d.321.1.1 (A:1-109) Afv3-109 {Acidianus filamentous virus 1 [TaxId: 235266]}  ali model 3D-neighbors follow..  12  19............TVKAKEITIQEAKELVTKEQFTSAIG---------QATAELLSSILGVNVP---MNRVQIKVTHGDRILAFMLKQRL............................................................................................ 84
3 -5.810d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  17  190.........................................VWNDDTQSYVL---NFHG-RVTQASVKNFQIIHGNDPDYIVMQ-----FGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE....................................................... 265
4 -5.450d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors follow..  12  35...........................................GRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQ-----VSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNK-----VFAKIAADMAK... 159
5 -5.300d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii [TaxId: 1474]}  ali model 3D-neighbors follow..  14  30..........................................................................NTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNRE............................................. 91
6 -5.200d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  9.........................................................................LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLST.......................................................................... 42
7 -5.150d1qaga1 a.40.1.1 (A:31-151) Utrophin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2..................VQKKTFTKWINARFSKSGKPPINDMFTDLKDGRKLLDLLEGLSTRVHALNNVNRVLQ-----VLHQNNVELVNIGGTDIVDGNHKLTLGLLWSIILHWQVKDVMKDVMSDLQQTN................................................ 121
8 -5.130d4jxua_ e.17.1.0 (A:) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  16  194.............................SNIFMVKDGVVFTLAGITRSRVMGLLSEAGFEVIETSLT----DFEGADEIFTSGNYSKV............................................................................................ 258
9 -5.110d1p5sa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  16  1........RETLQAYDYLCRVDEAKKWI-EECLGTDLGPTSTFEQSLRNGVVLALLVQKFQLQFRHSDNINKFLDFIHGIGL--PEIFHFELTD-IYEGKNLPKVIYCI........................................................................ 109
10 -5.010d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}  ali model 3D-neighbors follow..  10  106...........................VNSNKSIVGQGTKGVI---KGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHH.............................................. 210
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.