current user: public

If you have questions about the server, please let us know.

Query: gi|11497066|ref|NP_051169.1| hypothetical protein (BB_P08) [Borrelia burgdorferi B31], from B.burgdorferi

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MCGGCLMNGVRKRLSDMSFRMINVFKDPKPLKFYKGTVVKLENDSSYQRVFDKTKYIEFAGVIIDIKPQELAILYDSDMSDIQGYSKLYTYQDLNYEPKDRISIADLVYFEIFSIDSSIGYFTLVLKEFIWTNLast
1 -38.300[R] COG5614 Bacteriophage head-tail adaptor  ali follow..  4............................SAGRLTQMISVLNPVLTRNAAGEMTEEWVSCGKIHADIRGRSSRERMQSGAEMAQAEIRIWVRGQSGITAASRLHVLRDRILNVVGLDVTGGRLEILCRLGG... 114
2 -5.730[S] COG4077 Uncharacterized protein conserved in archaea  ali follow..  1....MIVPGTPIHIHRLAKKIMDAFEGSRPLLDDVDVLIVR--------GMSRGEDWDLDNLQGYLESVLERCDVEVVDPESPEGKELIEELGKFVVERIQAQYADEEPVSVRPVENPMEAVDAFTQGEIFLD 124
3 -5.250[J] COG1093 Translation initiation factor 2, alpha subunit (eIF-2alpha)  ali follow..  49......VKHIRSYLRRVVCKVINVNQERKNVDLSLKRVNQHQSREK------IAEWKNEQKADKLFEIVCSKLNKDLEACKKEFGVRLVELYGTLFAAFESAAAAEGEWLPDINGDWKDTFVEVAKENIT... 169
4 -4.950[J] KOG2916 Translation initiation factor 2, alpha subunit (eIF-2alpha)  ali follow..  11  31............................................................GAYVSLLEYNNIEGMILLSELSRRRIR---------SINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVS... 91
5 -4.630[L] KOG1508 DNA replication factor/protein phosphatase inhibitor SET/SPR-2  ali follow..  15  112......LLAVQVELEPVNAQA-KMERRRKPHLDRRGAVIQSVPGFWANVVSFSVFLRPFYLFDLNQHPQMSALITDEDEDMLSYMVSLEVEEEKHPVHLCKIMFRSNPYFQNKVITKETEYRASHSTPIEWYP 256
6 -4.630[J] COG0094 Ribosomal protein L5  ali follow..  10  1......MAKLHDYYRDVVSELKNKFGYKSVMQVPRIEKITL----NMGVGEALTDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKI----RQGYPIGCKVTLRGERMWEFFE-----RLITIAVPRI.... 111
7 -4.480[K] COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain  ali follow..  11........SLPKNLLDEFDRIISTRGYSSRSEAIRDAIRTYITEYRWLESEKGEIVGVLVVLYDH-----------HVKGVSDLLIDLQHDFHEIITSSTHIHLNEDQCLEMILVKGKMERIKVLVDKI.... 120
8 -4.220[S] COG3102 Uncharacterized protein conserved in bacteria  ali follow..  12  56.......ERWRRGFEQCGERPICLFKLHEPVQVAHWQFSIVELPWPGEKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEHERIKFHPWSIEEIVASEQSA.............. 190
9 -4.220[S] COG4991 Uncharacterized protein with a bacterial SH3 domain homologue  ali follow..  11  5.............................................................ARASIFTLALLVSTNAYASSAIVTSTVNLRTGPGTQYGTIGAIPNGVGIMVAGCTRGYGWCQVSYGGMTWAA 77
10 -4.170[T] COG5040 14-3-3 family protein  ali follow..  1......MSTSREDSVYLAKLAEQAERYEEMVENMKTVASSGQELSVEERNLLSVAYKNVIGA-ASWRIVSSIEQKEESKEKSEHQVELICSYRSKIETELT................................ 96

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.