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current user: public |
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Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . | |||||||
# | Score | Template | Links and tools | %id | First | MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVK | Last |
1 | -6.480 | [J] COG0198 Ribosomal protein L24 | ali follow.. | 14 | 6 | ......RDDEVIVDKGKRGKVLKVLADDRLVVGGVNLIKRHTKPNPMLGQQGGIVEKEAPLSNVAIFNTETSKADRVGFKVEDGKKIRVFKSTQK.............................................................................................................. | 100 |
2 | -5.560 | [S] COG1851 Uncharacterized conserved protein | ali follow.. | 12 | 37 | .........GFDLIFG-DGKETYFTVELDERKAGDKFSKDGKEYE--IEVLQELPKNTELYAHIEM--------------------------EMGKAYIVCQLRDEDGKNTEVLRVPAATLLLAFLKKNKLANIIKAIKNVGISLELSMQNGVGGKPLSYEELPNVARRFIRSARKVEKETGFGRLSYYGETKDGEPRYRFSWL. | 207 |
3 | -5.550 | [P] COG3420 Nitrous oxidase accessory protein | ali follow.. | 14 | 40 | AIEKAEPGDVVRLRAGHEGAVV------DRAIELTGEPGAVLDGLGTGNAITVN-APNAIVRGLEVHGSGDNLPDL---------HSGIFVSRTATGAVENNRLIGNTYGIYLHGAADSIAIGNEVLG............................................................................. | 154 |
4 | -5.470 | [M] COG5434 Endopolygalacturonase | ali follow.. | 8 | 303 | ...ISTGDDHVAIKASGGATRNLLF------AHNHFYYGHGLSIGSETDGG----VSNMQVTDLAMDGNDSSG------------GNGLRIKSDNNIVYNGICMRNVKEPLVFD........................................................................................... | 398 |
5 | -5.450 | [J] COG3130 Ribosome modulation factor | ali follow.. | 10 | 37 | ...................................................................................................................................................................................................RSQWLGGWRE | 46 |
6 | -5.270 | [C] COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG | ali follow.. | 16 | 97 | .............PDGYSGAIQLIVGADFNGTVLGTRVTEHHETPGLGDKERRLSDWITHFSGKTISGENDTHWAVKKDGGDFDQFTGATITPRAVVNAVKRAGLYAES................................................................................................ | 193 |
7 | -5.080 | [S] KOG4753 Predicted membrane protein | ali follow.. | 9 | 1 | ..MYNNGARGFSIHDAFEEETDEAIRVYGSTVISTPMRGKQGRSTEDVSIRIQDPKGYNKYAEDTTSRDSDSLIQEYGNLPTEETNTY-KVRENWRTVLAAFTLLVVGTGLFV............................................................................................ | 115 |
8 | -4.880 | [R] KOG3005 GIY-YIG type nuclease | ali follow.. | 11 | 5 | ILSSDSDDDSFSGDK----KIRFSFGASN------------MSQDTTQEIIPEDTDTVPLTIPSTPALSGKFDSKTPKSVRRRSVS---------------SCFTPIVETINQPPTNQACSSFLQKEYNFHDLSSDEEGGDGGAGCSKDEDKIIEDNLNLRALLSPEKKKRKEKIEEVQNEFYKNRCYIGYIMQHNGGRDKGGAK | 216 |
9 | -4.880 | [A] KOG2634 Initiator tRNA phosphoribosyl-transferase | ali follow.. | 11 | 76 | ..........FKSTDGHTNNLSFNTSRLNLHLPLLAGEKGGC-IDSTRKGKDSMSKTIPMVVNRSIFNHWNRLCNIDAVSYNGLTSDDDGDNIRKLLDKWDCSLHLPLWVSNTERASIEARLDEWTRELDESGADIASLASCKTVIWLNEVPEHDSWDFTPLILVSASASGELQNRTSSEFSW---NYIPGAGDDEESWARGWTH | 292 |
10 | -4.860 | [R] COG3979 Uncharacterized protein contain chitin-binding domain type 3 | ali follow.. | 6 | 408 | ................................DNGTTEPDVTPTPAPVTDENVAPVARIA-SPVSLSAEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNA-TQYVVNLTVSDGTLSSTAVYTLNVKAKAAAADDEDKTTSYPAWSSSQKWNPGDIVNSNGALYQCKPFPEGSWCNVAPAYYEP---GV----GIAWADAWNA | 586 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |