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Query: gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEWGVRFYVLSKQEWKQQTIDRCGQFYCLVPSNAGFHVYLFVTMDTGENAVFVFPPHFFIRYRERYWGKHSTLSGKILRKTYLKDNLVMRYGLQPGSEERVTGARIYSASSHGVALGIVLNDEAYLFKTFITYAMTKGEQIPLYMQEKLSMERAQVEYYNTGRLADLVELEERDRKRREMLMAEERRREEKEKRRAAEPGEAYFYVEGPLTLIMPDEEIQEENTGFWQRGTTMFCDSKLIEESQREMRELASVEARIQELKNIPQKAEEKKGVFKRLFGRYFLast
1 -8.790[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  12  116...................................................................................................................................KSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFF--------EHDLRGQTQEEGRWEHD--KFREDEQAPKSRQELIALYGYDIR----AHNPDDIKPRR........... 257
2 -8.190[S] KOG4351 Uncharacterized conserved protein  ali follow..  14  1...................................................................................................................................EKQRLRAEKKQRKAEVKELKKQLLHRKIHLWNSIHGLQSPKSPLGRPESLLQSNTLMLPLQPCTSVMPMLSAAFVDENLTHLQPGTKFIKKNTG-WSADTKLMWGNLTLASTEKKDVLVPCLKAGHVGVVSVEFIAPALEGTYTRLFGPRV 172
3 -7.440[R] KOG0125 Ataxin 2-binding protein (RRM superfamily)  ali follow..  11  44.....................................................................................................................................VPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHV-SNIPFRFRDPDLRQGSKGF---GFVTFENS---ADADRAREKLTVVEGRKIEVNNATARVMTNK........... 194
4 -7.360[K] KOG3119 Basic region leucine zipper transcription factor  ali follow..  25  232....................................................................................................................................................................................................................FTPDNK---KDESYWDR------NNEAAKRS-REKRRY-VLEQRVIELENHVLKAQ----AIRDKFN... 293
5 -7.300[K] KOG3248 Transcription factor TCF-4  ali follow..  22  313...............................................................................................................................................................................................HQDSKKEEEKKKPHIKKPLNMLYMKEMVVAECTG-WH---------ALSREEQAKYYELAR-KERQLHMQLYPGSARDNYGKKKK...... 405
6 -7.300[D] KOG0642 Cell-cycle nuclear protein, contains WD-40 repeats  ali follow..  27  35...............................................................................................................................................................................................DGAAAAGAARAQYSLPGILHFLQHE----------WAR----------VERAQWEV-ERAELQAQIAFLQGERKGQENKKDLVRRI..... 102
7 -7.110[KDR] KOG2151 Predicted transcriptional regulator  ali follow..  16  270.......................................................................................................................................................................................................EDVLFYLPNEIYQVAAACELYAREWRFWEKGHYNVFDQMQWRKIPKELKEYKELEDRPKMPQSVSGQPTPYK........... 368
8 -6.990[S] KOG4382 Uncharacterized conserved protein, contains DTW domain  ali follow..  21  124..............................................................................................................................................................................................................PPPLRLIVFD--------ATWKHAKEMVKASEVVLRSELVLRKVTTAEAVARCLGAIEPDGEEIERKLISVLKEM. 220
9 -6.840[A] KOG0108 mRNA cleavage and polyadenylation factor I complex, subunit RNA15  ali follow..  18  1...................................................................................................................................................................................................MSMTAGNVVFV-GNIPYDVSEQQMTDPETG--GKGYG-FCEFFDSETTAMAVRKLNNSEIRVEFPSNDPRRNQSYE........... 94
10 -6.800[K] KOG4395 Transcription factor Atonal, contains HTH domain  ali follow..  17  103............................................................................................................................................................................................................................................RRRQAANARERKRMNGLNAAFERLREVPAPSIDQK-LSKQMAQSYI 152
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.