current user: public

If you have questions about the server, please let us know.

Query: gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MSILNDIWNRIVRRTDRQKVTATEAAGTEKRVYAVATEEGVMLFSDTPKGMKARNSYLQHLADGFFNVAKVSETLRIYEIDLPTKRVAELADNCIEKLSKADLRSTDAQLRRSVVSFTPDKFADRSVLDGGVCWAKFDLRPDFHNFDRLTREFGLGISPRNYDVAALLYISENGYAGIVAADKVHPFSYEYEFRELAEKLEDSMKARMNAPLSAHDFGYAALQKEAREMAADLLQSEFHAKDGEFRLGARISWIERMETLHPMSRPHSEEVKTGKLPETYRRQETPRQKPSDRQRQARHVAPIAPQKKEKKQLILLast
1 -7.230[S] COG1667 Uncharacterized protein conserved in archaea  ali follow..  11  1MMIPKGEVVELGKRGNFRDILKELSATGFTGYLEVSYKRAKVLFSNGKVGEKALEELLG----------LESCVVDVYALDEGKVAKALEWNRNAVVEHLPETEVEVEGGLTEEII-REAILKKYGIKMPSEEEIDQIIMNALDGSYDVIAATTSAPGDFESLKNSLISTAE--YLGKMSKKVVDVINDCKSAEELVERFDEIRSAAKSLVIFIPRKKIDEMLSEMERLIGESI................................................................................. 247
2 -6.570[S] KOG3383 Uncharacterized conserved protein  ali follow..  74.............................................................................................................................................................NCKFPHIKGLCQICSNSHPDDSAWNSNDPYYDPKS--QSEYKLDRPVTLRELKMHKENQLKSMELLNRSRLSISRVKPEEWKFIHELSKQPEPEEIIKARLQEEEKVAKRKRKLNLSDGENKAKSPYSSISENDASLDIIKRSRIKDVRSQKDNAL.. 239
3 -5.710[Q] COG3648 Uricase (urate oxidase)  ali follow..  60.........................DGDNTLVVATDSMKNFIQRHLASYEGTTTEGFLHYVAHRFLDTYSHMDTITLTGEDIPFEAMPAYEEKELSTSRLVFRRSRNERSRSVLKAERSGNTITITEQYSEIMDLQL-VKVSGNSFVGFIRDEYTTLPEDGNRPLFVYLNISWQYENT-----------NDSYASDPARYVAAEQVRDLASTVFHELETPSIQNLIYHIGCRILARFPQLTDVSFQSQNHTWDTVVEEIPGSKGKVYTEPRPPYGFQHFTVTREDAEKEKQKAAEKCRSLKA............. 324
4 -5.660[S] KOG4705 Uncharacterized conserved protein  ali follow..  12  74.........................................................................................................................FINQSVQSGGLLHFATPVDPKADKEGKFQPLDQVVVDNVFPNCILLLHVTEEKGNPEIDNKKYYKYSKEKTLKWLEKKVNQTVAASTDKEEDYIRYAHGLISDYIPKELSDDLSKYLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVDKSGMKSIVKNKKKIGKV.. 312
5 -5.190[S] KOG2637 Uncharacterized conserved protein  ali follow..  11  350.....................................................................................................................................................................................................................................CESICSTYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKGLTAKQTERIQMINGSDLPKVSTQPRSKNESKEDKRARKQAI. 434
6 -5.170[Q] KOG1599 Uricase (urate oxidase)  ali follow..  11  47..................HCLSSYRLDDNSDIVATDTIKNVYVKAKECGDRLSVEEFAILIGKHFCSFYPQVFTAIV-----------NIIEKPWERVSIDGKPHLHGFKLGSENHTTEARVEKSGNLTSGIGGLAL-LKTTQSGFERFVRDKYTILPETRERMLATEVNASWRYSYESVASIPTK---GLYFSEKFMDVKKVL-MDTFFGPPETGVYSPSVQRTLYLMGSAVLKR............................................................................... 251
7 -4.900[K] KOG4134 DNA-dependent RNA polymerase I  ali follow..  220.................................................................................................................................................................................................EEAAKKPKKKKKKKDPETYEVDSGTTKLADDADDTPMEESALQNTNNANGIWEEEPKKKKKKKKHQEVQDQDPVFQGSDSSGYQSDHKKKK--KKRKHSEEAEFTPPLKCSPKRKGKSNFL. 338
8 -4.690[R] KOG2897 DNA-binding protein YL1 and related proteins  ali follow..  9.............................................................................................................................................................NNAGNKIAHLLNEEEEDDFYKTSYGGFQEDEEDKEYEQKDEEEDVVDSDFSIDENDEPVSDQEEAPEKKRKRGVVNTKAYKETKPAVKKETKATPALHKKRPGGGVTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVR... 163
9 -4.570[R] KOG2785 C2H2-type Zn-finger protein  ali follow..  11  324........................................................................................................................................................................HMNDKSHCKLFTDGDFYDFRSSYPDHKEGEDPNKAEELPSEKNLEYDDETMELILPSGARVGHRSLMRYYKQRFGLSRAVAVAKNRKAVGRVLQQYRALGWTGSTGAALMRERDMQYVQRMKSKWMLKTGMKNNATKQMHFRVQV.. 475
10 -4.330[P] COG3256 Nitric oxide reductase large subunit  ali follow..  38................................EQVVSASGKVLMTKDDAGQSAWQSTMEVGSGAYQAPDWTADWLHRELSAWLDLTAQQTYGKKFDEVSPEEQAVLKTRLADE---YRNQSRIKEDGSVVISDTRAKAIESILPYYHGYGDDPALQTTREHF------AMKNNTLPSQEAREKLFDFFFWTSWSASTNRPGEVFTYTNNWPHEPLINNVPTTENYMWSFTS-LLMGIGLLMWGYSFLTKHEEVEVPSEDPISKIQLTPSQKALGK........................................ 282

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24