current user: public

If you have questions about the server, please let us know.

Query: gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst MFRFDFRDKGMIPPILGTDNADYLERLCPVLERERIHPSGVVRLRDAAFCEERGIAHLSSSAEHMTLLENEDYRRLGHRFGMDGDVIRNGLAAFPTCMVVEYEGKVLLFDKTDSGDRMLDAFLSRLAERFFDGKRKSGSLRFYEVAPLDAAYRAKIGDGQTVSSDMVRYGICVACCDMAPTLRNFNKLRNLQRQPIPLTGEQEQIVSSLVVQPDNVRFPNVEMRVRIPVKRKGQGMNILast
1 -5.660[K] COG3561 Phage anti-repressor protein  ali follow..  11  2...................TSQLIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFVENQDYIAISQKREIG-----YGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFIE.................................................................................................................. 101
2 -5.470[J] KOG1149 Glutamyl-tRNA synthetase (mitochondrial)  ali follow..  13  80LLRLEDTDQKRLPIKQSERKLIYDKYVKILLSSGKAY----------CFCSKERLNDLRHSAMELKPPSMASYDRCCAHLGEE-EIKSKLAQGIPFTVRFKSPERYPTFTDLLHGQINLQPQVNFNDKRYDD--VKSDKLPTYHLANVVDDHLMGITHVIRGEEWLPSTPKHIALYNACPKFIHIPLLTTVGDKKLS---KRKGDMSISDLKRQGVLPEALIN............... 316
3 -5.220[K] KOG2181 LIM domain binding protein LDB1/NLI/CLIM  ali follow..  12  6FLKFLFSDNGN----NQHGTEAAFGRL-----------AQSYRIQDLLFIIPPSARPPLNHVDQLKSLQATALGKPGMRSQATEPQPIGNTVSPLEFRIHDMNRRLYIFSSTGVSENDQQQWWDAFSHEFFDDDCKL-WFVIGSEPVAFASRERYIINRQFIPKSIFDSGMRELQYVLRGPSRECTLANGSQAYENENVL-RYDQSSQFEVNTEG....................... 223
4 -5.200[S] COG5445 Predicted secreted protein  ali follow..  295...............GNHITFVSHGETTLLSEKGKLKLQSHLDREEYVAVLDREAKSTPPEAAKAMTVAIRTFLQQNANRSSATQRVSASPATTGARTMTAWTQDLIYGSRATEGTLSWRQYDQILAFAY............................................................................................................ 437
5 -5.120[L] KOG3041 Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family  ali follow..  10  12......NSRRLFRTMSTVKGKPEDAKIIEARHVKETSDCKWIGLQKIIYKDPNGKEREWDSAVRTTRSSGGVDGIGILTILKYKDGKPDEILLQKQFRCIEMPAGLI-----DAGEDIDTAALRELKEEFNDPGFTNTNLCLVTVEVDMSLPENQKPVTQLEDNEFIE----CFSVELHKFPDEMVKLDQQGY............................................. 209
6 -5.110[S] COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB  ali follow..  19  13.VRYN-REKEKAPRIIGKGKGLVADELIKRAEEAKVPIQKDPSLVELLGQLEIN........................................................................................................................................................................................ 64
7 -4.870[I] KOG2818 Predicted undecaprenyl diphosphate synthase  ali follow..  54VLADCRSQLTKTPQISPVDAGVDAVLLSRIFDFALDVGIKHVSLYDRRTKGRGYVDMADLCRSTNADTGSCLKWPPVASPSKLENQPKNGQKTNGYVNGSHSPQLQLHQISASDGHALIADVCRELYEDSKTELVQSLLKQKREAEQISDMLSKRLGFEAPEPELGIVFARQTCTYGLLPWHARFTEFH................................................. 249
8 -4.870[U] KOG1300 Vesicle trafficking protein Sec1  ali follow..  1.....................KLAAAIWDCISKYKAIPNFPQTETCELLIVDRSVDQIAP------IIHEWTYDAMCHD-----------------LLDMEGNKHVIEVPSKTGGPPEKKEIVLEDHDPVWL---ELRHTHIADASERLHEKMTNFASKNKAAQMRSRDGSELSTRDLQKIVQALPQYGEQVDGKINRIIRDTGLRDLGQLEQD........................ 176
9 -4.800[S] COG3735 Uncharacterized protein conserved in bacteria  ali follow..  86............TTLESHLPKERRADIEQKLVQRGIVLAAMNKIKPWVLSNLLATTKCEARKARGELFLDEQLAIEAQKQGREVKGLESIAEQFAAMNSLPLDFHIRNLIATVDFGDKIEDSMETAITLYLQGDVG----MIAPALRKIVPEDLSDADYALFQKVILTDRNHLMVDRATPLLEKGGVFLAIGALHLPGKE-----GVVELLRQKGYRLTAL................. 286
10 -4.690[S] COG5642 Uncharacterized conserved protein  ali follow..  12  65........................ATYERRKMAHRLSSDEGTRLARVARVWGLAVDVWQNEEEARDFLFRPH-------------------------PMIEDKRPIDVVILSEFGAEIAVDILGSLKYGSA........................................................................................................... 146

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24