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Query: gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GCETEGEDIDMRFETCTVSFVQQELRSSYEVYFNGEKSINRSTSVKKNSTLKLEVYKIGEKQPELSQEITLDNSKDIELLKLVGRDIAISSSLEEYTTFTPIISYFNPNTDLYTVTFNNGELSNKVKNYIAEADLSGTLKIVRNVDGQVLYEQDMTIMPEGQFSLMQLSDTDFLDISDGEEADPESRQYTKIRFFYTADAFPGHDKLKLVVYLMDLDAMQFTAPIATIDLEAGKISEYIQIDNDAFGQGVVNGVYDLIDESGNMIVNNLEHFNTSIPIGTSDNKFMTFRFMDPSHQGGDNVQCNFILSTPWKLast
1 -5.760IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  21GCTNAQNGSDSSKKETKSNTNVEQPKEENNTEKEVPNNKAKPTPKEETKAQSATIYSFDVDKTDLIENTKDIDGVKTGILDVSSDFTKGSDAETLMLDSVARTYIKNMNVEQIKITVDGSNYESG........................................................................................................................................................................................... 180
2 -5.400IDP91374 outermembrane lipoprotein [Vibrio vulnificus CMCP6] VV1_1919 [Vibrio vulnificus CMCP6]  ali follow..  13  16GCTTPTHLPLSGSQAIEIRIDDQFNPKHCQYLVTGNEGHWYSYLFFSNDTMMQGAVND------LKNNAKELDADTIFVIAPQAFVTSFSLLGTAY........................................................................................................................................................................................................................ 107
3 -5.050IDP01101 hypothetical protein GBAA_pXO1_0119 GBAA_pXO1_0119 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14.........KNNKKYISFKVNSSSYIKGLQIKKGNKFVETAVLEKNIQENSRIGEFEVDNLLNILDSKVHVK................................................................................................................................................................................................................................................ 76
4 -4.820IDP91809 gene: VP35; VP35 [Zaire ebolavirus] ZEBOVgp2 [Zaire ebolavirus]  ali follow..  14  22GPELSGWISEQLMTRIPVSDIFCDIENNPGLCYASQTKPNPKTRNSQTQTDPICNHSFEEVVQTLASLATVVQQQTIASESLEQRITSLENGLKPVYDMAKTISSLNRVCAEMVAKYDLLVMTTGRATATAAATEAGPSLYEESAIRGKIESRDETVPQSVREAFNNLNSTTSLTEENFGKPDISAKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQLAEGDSPQCALIQITK................................................................... 282
5 -4.750IDP04088 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2931 [Clostridium perfringens ATCC 13124]  ali follow..  17GCDSIKMDKLAA-GDIDLSLYFDGTKDEQNPKIE-QYLIQALIQGPSQKGSLAPILPKDTK-----LSFDIKDDIAIINLSKEAIVNMSATKEQATLEGIIATITQIPSINKINILVDNQMVDSLGGNFDISKPFG................................................................................................................................................................................ 173
6 -4.730IDP05454 putative lipoprotein [Bacillus anthracis str. Ames] BA_0190 [Bacillus anthracis str. Ames]  ali follow..  13  19GCKAPAKEDTTNFNEFSLDADYQDTKKDYEADYKNVAADKKMEAKIEDHDQVLNVFKLDKDYQKFELEVVFSDGTKKEY......................................................................................................................................................................................................................................... 150
7 -4.680IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92]  ali follow..  21GCSWFSSSSEAALQKRRI-----------DLQVVAAPLINPGPNGQAQP--KVCIIELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLTLKSDARADFNRVV--------VDGKALSLKASTK...................................................................................................................................................... 163
8 -4.670IDP05089 putative prophage LambdaBa02, lipoprotein [Bacillus phage lambda Ba03] BA_4065 [Bacillus anthracis str. Ames]  ali follow..  13  20ACSSDSSSASKNTTKNEAKEIPTEV-RSFVTNFNGILDENGSSTNTEKLSKDLKVVKEKGYQDKTLHVVSLIENQNIK----LGNMKNFRVILDDKQKVIQKITYVGDDPNVFLFSLESLKIDATVKDMLEDIRIKINRKDPKVESVAYTSSYKISFTYDPNSPTALLN............................................................................................................................................... 191
9 -4.630IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]  ali follow..  13  19GCASTSATDKSPQAKQEH--------KQNAFQLNSANITDIEILQTTNNTTSKSQTDNKEMIQSIVSAVQKGTPKTITL----------DQKKRKSAHSTITVTYKDDAKEEFLVWVDNKE-KDKVEGVTVNIKNTKMMK............................................................................................................................................................................ 148
10 -4.590IDP02813 RND efflux system, membrane fusion protein CmeA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0367c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  20ACSKEEAPKIQMPPQPVTTMSAKSEDLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIDSAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLN-FFISDTDKLNLVRNTQNGKWDLDSIHANLFIDSVIDANSGTVKAKAIFDNNNSTLLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNG................................................... 318

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24