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Query: gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENGIEEILKEHEALCSRVFHLLNTGNPQTKDIELIIPKVKELFGMLEAVNTKQITAQQYNGLLNVMSEWNAIFSYFNIKMVPCRLRPFLWNSPKVAVKRIPRQCIEGIVVSTKMQKTVVIEVERTKKHPKYGKTVQYTKKYKIHDPLEECSVGDRVLAHETRHFSKTKYFRFYRKLYLast
1 -6.930IDP91669 AGSK1_HUMAN [Homo sapiens]  ali follow..  13  1MEDGGQREERKRNAKCGQPPRVKIEGSVMQ-----VLDRRRQVGRAPQPPPQKRPP.......................................................................................................................... 51
2 -6.370IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  11  21...............................................................................................TSENQTQATEATGTIEQVETDAILINNFKEKKDKYNPEAAIRFDIVDKYYDETTDLNKNDDVKIQETSP.............. 103
3 -6.310IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  13  28...............................................................................................VEQVAVKEVPKEGYIILRNETVFLADDKTFETKIELQNYIEQQMNQFKDKDAYDQLKTGDKIKVFESYP-MIVEKFEIAE... 122
4 -6.140IDP04210 ZZZ_0017 [Escherichia coli O157:H7 str. EDL933]  ali follow..  1MINNVSSLFRNITAVYKKSSFSVSPQKITLNPVKISSPFSPSSSSISATTLFRAPNAHSASFHRQSTAESSL.......................................................................................................... 76
5 -5.860IDP06042 hypothetical protein jhp0369 [Helicobacter pylori J99] NP_223088 [Helicobacter pylori J99]  ali follow..  1M--GINMCSKKIRNLCFGFILSLCAEENITKE----MTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINANPYEKFELLSNIQASPLLYGLRSG........................ 151
6 -5.540IDP02739 peptidase M16 family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1321 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  8LNNNLDIYIKKDIGISHMLEHMMFKGTNKYSKDEL-NSIVENNGGIQNAFTSFDYTAYYQFWHKKNLELSLSIESSRMSDLLFDENEFMPEKKVVLEERSLRVDDKAFSYAFEQFMQLAVIGWREDIKNYTLDNLKKWYQQNYAPNNSSIVLVGD-IDTASALSMAKD.......... 205
7 -5.250IDP91937 ABC transporter membrane-spanning permease - Pep export [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003555 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  38LMKSNKTVESNLYKSLNTSFSIKKIENGQTFKLS-DLASVSKIKGLENVSPELETVAKLKDKEAVTGEQSVERDDLSAADNNLVSLTALEDSSKDVTFTSSAFNLKEGRHLQKGDSKKILIHEELA--------------------KKNGLSLHDKIGLDAGQ--GQTVEFEIIGIF. 196
8 -4.940IDP06102 protease [Helicobacter pylori] NP_223130 [Helicobacter pylori]  ali follow..  13  38LKNGLQVVSVPLEGIAHMLEHLNFKSTKNLKAGEF--KIVKRFGGVSNASTSFDITRYFIKTSEANLDKSLELFAETMGSLNLKEDEFLPERQVVAEERRWRTDNSPIGMLYFRFFNTAPIGFMDDIQNWTLKDIKKFHSLYYQPKNAIVLVVGD-VNSQKVFELTKK.......... 236
9 -4.870IDP05457 gene: gerPF1; spore germination protein GerPF [Bacillus anthracis str. Ames] BA_1144 [Bacillus anthracis str. Ames]  ali follow..  14  7............................................................................................................................................NLVVQNSNGSFNLGDFYNVS---PKENTKAY....... 34
10 -4.680IDP06286 gene: infA; translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] NP_344772 [Streptococcus pneumoniae TIGR4]  ali follow..  25  8........................................................................................................EVEGKVVDTMPNAMFTVELENGHQILATVSGKIRKNYIRI-------LAGDRVTV-EMSPYDLTRGRITYR... 70

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24