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Query: gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEWGVRFYVLSKQEWKQQTIDRCGQFYCLVPSNAGFHVYLFVTMDTGENAVFVFPPHFFIRYRERYWGKHSTLSGKILRKTYLKDNLVMRYGLQPGSEERVTGARIYSASSHGVALGIVLNDEAYLFKTFITYAMTKGEQIPLYMQEKLSMERAQVEYYNTGRLADLVELEERDRKRREMLMAEERRREEKEKRRAAEPGEAYFYVEGPLTLIMPDEEIQEENTGFWQRGTTMFCDSKLIEESQREMRELASVEARIQELKNIPQKAEEKKGVFKRLFGRYFLast
1 -8.100CPX_91754_91753 Complex of TVB1_HUMAN with TSST_STAAU [Undefined organism]  ali follow..  29  288...........................................................................................................................................................................................................FEIRHQLTQIHGLYRSSDKTGGYWK-GSTYQSDSKKFEYNTEKIDEIKTIEAEI......................... 350
2 -7.380CPX_91747_91753 Complex of Q8WLQ7_HUMAN with TSST_STAAU [Undefined organism]  ali follow..  25  241.................................................................................................................................................................................................KKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWK-GSTYQSDSKKFEYNTEKIDEIKTIEAEI......................... 313
3 -6.550IDP91673 CD44_HUMAN [Homo sapiens]  ali follow..  28  672...............................................................................................................................................................................................SRRRCGQKKK----------LVI--------NSG---NGAV---DRKPASKSQ-EMVHLVNKESTADETRNL-QNVDMKIGV......... 742
4 -6.530IDP06223 hypothetical protein HP0439 [Helicobacter pylori 26695] NP_207237 [Helicobacter pylori 26695]  ali follow..  21  1....................................................................................................................................................................................................................MSKRSEVLEQFHG--KRRMGLWGDPK---ENEEQTLFLEEIE---NELKQLENKENLKADNNTEF..... 66
5 -6.230IDP91394 hypothetical protein VV1_1133 [Vibrio vulnificus CMCP6] VV1_1133 [Vibrio vulnificus CMCP6]  ali follow..  16  103..............................................................................................................................................................................................................QRQPLFIILD--------ATWQEARKMLNKSEWLKASNYQLRRLCTLEIAAELVKQLAHNATSMTELLRHYLAAF. 188
6 -6.140IDP05752 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0435 [Listeria monocytogenes EGD-e]  ali follow..  14  5.................................................................................................................IFIG-------ILSFTILIQTVIVSNFNVVYATTEEHKQEAI-----KLEKKSTNNNIICIKGAVKDKEYKLSLPKSFNLDEKKTGKEEYNKEKNELTIIGTGEEILASQTGKYE---------ELKEGDKVQ----AKLDLIIKNVDE--EVAKTVEKSNRQL..... 147
7 -6.110IDP05428 hypothetical protein lmo0717 [Listeria monocytogenes EGD-e] lmo0717 [Listeria monocytogenes EGD-e]  ali follow..  21  128..................................................................................................................................................................................................................ALIKR---IQVESNGLMQ-GSNRTDPATNIDAGTKQLASLAAYNANVHKYGGVPPFKETQNYL-TKIIG... 222
8 -6.010IDP90434 gene: pmpF; Putative Outer Membrane Protein F [Chlamydia trachomatis D/UW-3/CX] CT_870 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  786.............................YSSASKGYTVSSQASGAHGHKFLLSFSQSSDKMKEKETNNRLSSRYLIGAAACNYGTHNMRSFYGTKKSSKGKFHSTTLGASLRCELRDSMPLRSIMLTPFAQALFSRTEP----------------------------------ASIRESGDLARLFTLEQAHTAVVSPELAYLYWKRPTLLIQ--------NNGSWVTNTPLAKHSFYGRGSHSLKFSHLKLFANYQEVATSTVSHYINAGG-ALVF.... 1034
9 -5.990IDP01324 tonB1 protein VCA0910 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  21  167...............................................................................................................................................................................................AQVQPRYPRIA---IEGTVMY-----EIWLDAQG----------KQQLLSSSGTEALDQSALEA-IKQWKFSPHILDGVP--FK....... 246
10 -5.900IDP90383 gene: pmpA; Putative outer membrane protein A [Chlamydia trachomatis D/UW-3/CX] CT_412 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  728.............................FISRLGATGTSIIRLTPSLTLSGGGS-HMFGDSFVADLPEHITSEGVNSTLCAALDHNAMVRICSKKDHTYGKWDTFGMRGTLGASYTFLEYDQTMRVFSFANIEATNILQ---------------RAFTETGYNPRSFSKTKLLNIAIPIGIGYEFCLGNSSFALLGKGSIGYIKRENPAHLAM--------NDFAWTNGCSVPTSAHTLAQLILRYKACSLYITAYTNREGKNLSNSLSCGG-YVGF.... 975
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.