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current user: public |
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Query: gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 | |||||||
# | Score | Template | Links and tools | %id | First | MIQYNGITLLRDEDGTPMQVNIDLRVHGTELDAFMRAHGLTAQEQSEMLRSVTGEDISPTYVAGGKVQQHVRYLPEMKRQIQTETDRLFVSPRTRPVSVIRKEFPDLLLHRIVRVLTPIPRTKAATPKAFERYCGRDTFWVRFKMQGMMNVTWCVFFTIHDEGIVLVRHLAGAGENDEDL | Last |
1 | -6.110 | IDP01226 Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) BA_4187 [Bacillus anthracis str. Ames] | ali follow.. | 13 | 53 | YSLRPGIGLAAPQIGISKKFNPKIISHSVERTYLQSGEGCLSVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKENPFAAPDGSKPLER.................................................................. | 184 |
2 | -5.900 | IDP04288 gene: YPCD1.08c; hypothetical protein YPCD1.08c [Yersinia pestis CO92] YPCD1.08c [Yersinia pestis CO92] | ali follow.. | 10 | 3 | ...........................................................................KLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELL--------AKNPE-----LGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQD | 94 |
3 | -5.700 | IDP04229 gene: purN; phosphoribosylglycinamide formyltransferase [Clostridium perfringens ATCC 13124] CPF_0676 [Clostridium perfringens ATCC 13124] | ali follow.. | 9 | 2 | .................YKIAVLASGSGSNLQSILDN---NGNINGEVSLVIGSKEGIFALERAEKQGIKTSVVSKKEFEDKTSDEILRLAKENNIDLIVLAGYLSILKGKLLEEYGN--RIINIHPSLIPSFCGNKMYGINVHKAAIEKGVKFSGCTVHDGGAIIAQEIVEVNFEDT.. | 165 |
4 | -5.490 | IDP93869 alpha-ribazole-5`-phosphate phosphatase [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006898 [Yersinia enterocolitica subsp. enterocolitica 8081] | ali follow.. | 12 | 1 | ...................MRLFLVRHGTEANLRGVFCGLTDLALTPIASWLADVAFADGVSSQLLRARHTADIVLAGHPLNAGINDQLNEMNGEWEMRHHHDLQREDPDAWAAWVTDWQQASPTGGESFIQFSDRVESVVQSLLSTNSHQTNRHQTNNHDNNQLLVAH........... | 160 |
5 | -5.470 | IDP04119 adenylate kinase [Bacillus anthracis str. Sterne] BAS0131 [Bacillus anthracis str. Sterne] | ali follow.. | 10 | 14 | ...........................GTQAEQIVAKYNIPHISTGDMFRAAMKAETE-SFIDKGALVPDEVTIGIVRERLSQEDCVRGFLLDGFPRTVAQASALEEIMKDLGKKIDYVLNINVDSGLLLKRLTGR............................................ | 127 |
6 | -5.450 | IDP05129 gene: adk; adenylate kinase [Clostridium difficile 630] CD0091 [Peptoclostridium difficile 630] | ali follow.. | 15 | 19 | ...........................GTQAVGIVEKYNIPHISTGDIFRKNIKEGTE-EYMDQGLLVPDELTVGLVTDRISQEDCKNGFMLDGFPRNVAQGEHLDIFLKNAGISLDKVVNIEVDKSILVSRAVGR............................................ | 132 |
7 | -5.350 | IDP92034 adenylate kinase, putative [Toxoplasma gondii ME49] TGME49_024900 [Toxoplasma gondii ME49] | ali follow.. | 18 | 43 | ..............GAP---------KGTQSVKLKKSHCLCHLSTGDMLRHAVATGTE-AKLDAGELVSDEIVLGLIDEKLKTPECRRGFILDGFPRNEAQAAGLDNLLKQKNQKLDGVLYFDVPDNILVERVSGR............................................ | 163 |
8 | -5.010 | IDP06477 gene: A13L; A13L [Monkeypox virus Zaire-96-I-16] NP_536550 [Monkeypox virus Zaire-96-I-16] | ali follow.. | 18 | 11 | ............................SSYDDYIETVNKITPQLKNLLAQIGGDAAVKGGNNNLNSQTDVT---------AGACDTKSKSSKCITCKPKSKSSSSTSTSKSSKNTSGAPRRRTTATTSFNAMDGQI-------VQAVTNAGKIVYGTVRD-GQLEVR--GMVGEINHDL | 143 |
9 | -4.850 | IDP01657 gene: dapX; lipoprotein [Yersinia pestis CO92] YPO3061 [Yersinia pestis CO92] | ali follow.. | 14 | 231 | ......VQSGSDDTGLPLIVRAPYAVVWERLPAALEKVGMKVTDRSRPQGTVLSSSSWDALGAKDPELPEGDYK-----QVGDLDNRSSLQFIGPKGHTLTQAQNDALVAVFQAAFSQTSATAI........................................................ | 351 |
10 | -4.830 | IDP04342 gene: panD; aspartate alpha-decarboxylase [Bacillus anthracis str. `Ames Ancestor`] GBAA1564 [Bacillus anthracis str. `Ames Ancestor`] | ali follow.. | 14 | 3 | ......RTMMRAKLHRATVTEANLNYVGS--EDLMDAVNIVENEKVQIVNNNNGARLE-TYVIKGERGSGVVCLNGAAARLVQPGDKVIIICYGLVAEENIHKQEPKIA....................................................................... | 106 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |