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Query: gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSILNDIWNRIVRRTDRQKVTATEAAGTEKRVYAVATEEGVMLFSDTPKGMKARNSYLQHLADGFFNVAKVSETLRIYEIDLPTKRVAELADNCIEKLSKADLRSTDAQLRRSVVSFTPDKFADRSVLDGGVCWAKFDLRPDFHNFDRLTREFGLGISPRNYDVAALLYISENGYAGIVAADKVHPFSYEYEFRELAEKLEDSMKARMNAPLSAHDFGYAALQKEAREMAADLLQSEFHAKDGEFRLGARISWIERMETLHPMSRPHSEEVKTGKLPETYRRQETPRQKPSDRQRQARHVAPIAPQKKEKKQLILLast
1 -7.450IDP90316 gene: hctA; Histone-Like Developmental Protein [Chlamydia trachomatis D/UW-3/CX] CT_743 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  3................................................................................................................................................................................................LKDTAKKMTDLLES--QQNLLKAEKGNKAAAQRVRTESIKLIAKVY--RKESIKAEKMGLMKKSKAAAKKAKAAAKKPVRAAKTVA----KKACTKRTCATKAKVKPTKKAAPKTKVK..... 115
2 -5.050IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  10  2..............................................................................................................................................................KKGNRKALLISLI------ILSMVVSTIYPTVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKAT----------DNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALE... 140
3 -4.620IDP91328 ribonuclease G and E [Vibrio vulnificus CMCP6] VV2_0290 [Vibrio vulnificus CMCP6]  ali follow..  14  53................................VTPSVDKRFETFSAPKYGFRAGARTLRTYQNKHFAPSNENKK................................................................................................................................................................................................................................................. 105
4 -4.620IDP06042 hypothetical protein jhp0369 [Helicobacter pylori J99] NP_223088 [Helicobacter pylori J99]  ali follow..  3.............................................................................................................................................................................................................................INMCSKKIRNLILCFGFILSLCAEENITKENMTETNTTEENTPKDAPILLEEKRAQTLELKEENEVAKKIDEKSLLEEIHKKKRQLYMLKGEL. 95
5 -4.340IDP90214 gene: m013L; m013L, M013L MYXV_gp017 [Myxoma virus (strain Lausanne)]  ali follow..  31.......................................................................................................................................................................................................................YIERAEKEKIDRIDLAHKISEQYLGTDYIEFMKRVTDFIPNKVYVDSLLARAEADAEATMEA----VTEAVTKAVTKEKMAIGVLKTPKKQRGVCRKLLF 126
6 -4.170IDP02229 gene: psaF; hypothetical protein YPO1302 [Yersinia pestis CO92] YPO1302 [Yersinia pestis CO92]  ali follow..  11  82YLFPLHSYQSSPDNMARGSLNSLASPLSLYVYEIHNKKNNVVTFFNGDRGFIDVNGETIHLSSLFLGVQGEHIHTSYHDVS.......................................................................................................................................................................................................................................... 162
7 -4.040IDP93892 hypothetical protein YE1451 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005759 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  82VFFPLHSYQSAPSGQPKGSLKSLGSPLSVCIYEVDNQKKNIVSFFHGDRGFIEINGETIHLSSLFLGLQGKHIHASYCSLS.......................................................................................................................................................................................................................................... 162
8 -3.840IDP91557 gene: ECs4642; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB38065 [Escherichia coli O157:H7 str. Sakai]  ali follow..  18  31..................................AKNNEGKYVISKA-NGNPVFKELFWKAIDEFNFPQEELNRLKQYR............................................................................................................................................................................................................................................ 74
9 -3.800IDP00785 pathogenicity island protein SACOL0904 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15..........................................................................................................................................................................GDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV 175
10 -3.770IDP04210 ZZZ_0017 [Escherichia coli O157:H7 str. EDL933]  ali follow..  6..........................................................................................................................................................................................................................SSLFPTVNRNITAVYKKSSFSVSPQKITLNPVKISSPFSPSSSSISATTLFRAPNAHSASFHRQSTAESSLHQQLPNVRQRLIQHLAEHGIKPA... 99

FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 4 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24