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Query: gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GCETEGEDIDMRFETCTVSFVQQELRSSYEVYFNGEKSINRSTSVKKNSTLKLEVYKIGEKQPELSQEITLDNSKDIELLKLVGRDIAISSSLEEYTTFTPIISYFNPNTDLYTVTFNNGELSNKVKNYIAEADLSGTLKIVRNVDGQVLYEQDMTIMPEGQFSLMQLSDTDFLDISDGEEADPESRQYTKIRFFYTADAFPGHDKLKLVVYLMDLDAMQFTAPIATIDLEAGKISEYIQIDNDAFGQGVVNGVYDLIDESGNMIVNNLEHFNTSIPIGTSDNKFMTFRFMDPSHQGGDNVQCNFILSTPWKLast
1 -4.530PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;  ali follow..  8  46GIWLDDETETPLMRIIGDTIYYSDQSAPVYFKILKDTLSEYSFWFHSLADNIIKLHKSEDPNDTLAFRAYVYINPSQMKVVKTTYSEDGISMDNIYYDNVMHICVYEGKKSLYAKDITKQMFVDVIPTDFLQQAILSDMNFIGIDRKGYHYQALVCIPESPVCNLVNLT............................................................................................................................................... 258
2 -4.410PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  8  1....................................................MNILNNKNKRTSIFKALAL---FAAVSFTFVSCDDDMDIQQSYPFTVETMNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDF...................................................................................................................... 144
3 -4.300HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  9  23SCSEEEDCSMNARPMMQCYLYKIDFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLS-MDC---------GYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENL...................................................................................................................................................................................... 160
4 -4.130PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  12  37................NLEVILVKDIQHISDTTHHTHAHDP----HKSSYKILHV--------MLVSSDPSVTGYKSVMMRLIDPHGVDIYDPAAGGGLFNLNGKETPYTFKVSTKLDGQPLKIDFLYNHPKHFRHGLHIIELYVDGLKIGEEHFVI........................................................................................................................................................... 167
5 -4.130PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  12  1.......YIQTSFYQEKINEIISPLSRSYRFTYEGTFFDQ------DVLVNKIKVTPRSRGERVFEGYIYIIEDLAIHSLNLKTSLLGFQIQATQQYAPVAENVW-MPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEIIDEKVQEVPDEVAEFDKSESALEQLAKEQPTTRKEYRKMINEYEKEAMKEREEPEVIRESYYSIDSLAKLSYWDSIRPVPLTEKEIEGYNRDD...................................................................... 236
6 -4.120PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  12  6.CSPWGRF--------------------YLLLF--------IFASIMKKEFIGRTAKSLSLALAIFSGCIF-----GSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRN------IRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTE.................................................................................................................. 170
7 -3.320HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  10  39......NAFQQKYPDVKNVKWEIL-VGAYEAEFIYSGTYSENGQHIVLDKVEAQAY--TQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVEFDEPDSE-------LLINFDGTL............................................................................................................................................................................. 162
8 -3.170PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  7  19SCEHK-ELCFHHPHMVTLRVAPQADPEGMCVYFYPEEGESPIRFDFAGKDGRILCYNNDTESLLFRGMEGFDTHEGYT-GNVFESIYGNGAHYAPPAKGSEDERVVICPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYM------TQACGSLSSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKFYTFGHHEENARPH.......................................................................... 266
9 -3.080PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  13  42SCYTRPDLTSEELSEKTKDSLNYLYDRHYTWNTNLEVTTDSVTMECLPIKDTYIALYKGDRVVVAEFAIHPADSVDSVWVKLAHTQEEQGWIRET---ELKESFVPTDSISQAIHFFSDTHFALFVGVYLFRAFRRKQLQLVYFNDIDSVYPLFLCLLMAFSATVYESMQVFVPDT---------------EHFYFNPTLSPFKVPFILSVFLLSIWLFLIVALAVLDDLFR................................................................................ 264
10 -3.070PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  8  21SCLDDDNSPDATIHAFALD-YKFTIDQLSREIYNEDSLPKILIKTLTTASGVVTMKDKSGNDSVININIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYS.................................................................................................................................................................... 194
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.