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Query: gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKHTLKGWLVDNAVTVDNKEDKILMLESAGSLTLEDILSEMKKEDTGLREETIEHAVKLYHRVLSDLMLSGYSVNTGLFRAVPQFRGVVDGGQWDQKKNSIYVSFTQDKDLREAIAQTSVNILGEKRDAMYIIGGEDAATRATDGMATAGRNYTLNGRLIKVVGEHESVGITLTDASGKVSKLPNDMLVVNNPSQLIILLPSDLTDGHYTLTVTTQYSGTNTLLKTPRSTSKVITIGQSGGSEGGNTSDGNLDENPLGLast
1 -4.550PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;  ali follow..  8................................................VFGLGIAVCLFSATNSIAQVKTHSSLRAENLEVI-TTHHTHAHDPHKSSYKILHVNFM-----------LVSSDPSVTGYKSVMMRLIDPHGVDIYDPAAGGGLFNLNGKETPYTFKVS------TKLDGQPLKI-----------DFLYNHPKHFRHGLHIIEL............................................. 153
2 -3.810PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  10  43...........................................................................................................................................................TGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQN---TKIFKGEYNVRIDPFIPLVRENTDGTLLHDGSVNTEI------SGTTKVKFEVQP.. 135
3 -3.480PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  68...........................TGTSYKVTRMAYNLWNGYVEEGTESLTTPSSLFACEYAAEFHQAIKIRFSEYYRERDFEKSSLRKQIKDLTEKNVIESTNAKEHSE................................................................................................................................................. 153
4 -2.650PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  14  3MHTWFECKIRYEKVMENGMQKKVTEPYLVDALSFTEAEARIIEEMTPFISGEF-TVSDIKRANYSELFPSDEESADRWFKCKLIF--ITLDEKSGAEKKTSTQVLVQAADLRDAVKKLD........................................................................................................................................... 118
5 -2.530PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  8..................EVLQFSDMKSDSPDLKTAMLGRIRAPRKVWTPSDFVDL-DAVDKTLQRLTKAEARIDRGLY................................................................................................................................................................................... 74
6 -2.440PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  91..............TILDEGSETTYAKVWQAIMFEDT-----------GDYDYNDLIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGS-THMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKFIEVDGKRMYAASSDIDYKSYDMVNKE------------NMPYGLA--VSNGNGTFSYKNSLFETYPGFSDWING................................ 289
7 -2.240PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  65.................................LQRIIKAGSSPQHDIMLLGALTALGACMSRHVRCLYGGKYHHPSLQCFVVAPSA--------SGKGILSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISGNNTGTGMDSDGTGLICEAEADTLSTAIGSDHGHWSDTLRKAFDHDVKKSYLSVLISGTPSQVQTFIPTAEDGSYSRQL...................... 279
8 -2.140PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  137.......................AVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKL---------DSDGKVADNA..................................................................................................................................................................... 199
9 -2.080HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  1...............................................MEQTSPIQALLQQRTLLQI------------------------EYYTEKEAFRKQTEQMGMQRKVKAWFPLRIGKSFYNSLNQNAIEVFRTEDQDIEHNFEFGRPVMFF----KAGETKTAQTDGKTEKKMLKYFSFTGTVSYVDGDRMVITVPDS-ADVPVGVQLSFDETSYKMMFDALDRTM........................... 166
10 -2.020PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;  ali follow..  10  210..............................SLGMSTLLPDVQYHFHDLNPNDVVNHAYNVLSYIYDNIEDGNTIA-GNMNSDIKWKVQYENSLIQPIREVIDINTGEYAS.................................................................................................................................................... 296

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.