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Query: gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDIIANIASILGFTMQMNDKFFAHGMNKEQADNEMLLLFLKQLSVKSKAIKEIHQKYHSLSNDFRLVAVFLTNPVIYEKIVTNRSRALRNALKESLQTPSARIAQTQLSAQLRPCFENLLVSIKDESHLSVEFSGINDCEMKAILRKILNAQKEIFQLHQQFCGIMKTIGSYPLGNWGDSEFDFIKTNQRVFISDFYSIIDYADIILMGYLDIYHCALNLKLast
1 -4.010PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  9VLMALFLGSQMTLSAQNEENKERKQRPTPEQMMQMQTNQMVRALMLDDATAAKFTPIYEKYLKELR---------------CRMMNFKPRARKDAAQGT-------------------------EANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKI.................................................... 139
2 -3.730PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  20  2........................................................................................LRRSVPKSIRTPPRKVWRRSWAATSKPPSGNLPKSGETRKQPTIKNEFINEKRPKVKMLQVSKCLIGLAVMMLQSCDVADNLRDMLCGNW............................................ 105
3 -3.180PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  57.............................GRNARLLMVIPMDAETPGGRLLRPQAQVMEEAIRHWATVLSVRLDLDAARCEMERQRFDGVIAMMERNDGPTLVVTDSQAIDVVHPTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEA-----HNRITSACNDIGMVQIPNKLEAALGGKKLQIEHAFGREFPELESGG--MDGLKLAIHCG.... 262
4 -2.730PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  11  48..........................IEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSLKTASGYASSLKACTHLYNDGIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDF.................................................................. 180
5 -2.700PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  16  1................................................................LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEIN------IYGLEKEVPLQEVLTMIHTKEEGKQCS--VKPKSPADELEAYFFDVF-------------QDYD----EERVYPSDIKKIIQWYNIL............... 118
6 -2.620PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  13  10...................................MALVLTMCSAFSLKKGHSKTVYAFGIAASFTDTVVYFTDIQILDSAKVSKEGFLTHRLKNYVEDNGLQQNSTCMRKKLEKEATKILSKYKRNRNTTVTRIDTDKFHFIKP............................................................................. 131
7 -2.550PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  14  11......SIAEYLLYMWQIEDIIRVYGCSLTRIRKEYI----DKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFI............................................................................................................. 113
8 -2.530PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  10  16..........................IKEHVKGKKTGLFITLGADPAGEHGESMLKVGRELEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQASTHPDENDL...................................................................................................... 111
9 -2.450HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  1...........................................MQVDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCG-DCLDLERCPTVGEILENNPSALKNLK................................................................ 126
10 -2.350PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  17  16..........LLLFACPI---IFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEER-------NDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRIL............................................................................. 140

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.