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Query: gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AATLFTSGKPVEELSENAAVGRKSVITAAGATLPLPFYSEAFKMYWEKNDIPVTYAGIGTERGFRSLKNQQIDFAGVDVPPTKAELDSLPVKSILVPTCMGAVTIAYNLEGVDNLRLTGELIADIYMGKILKWNDARIAAVNAGKQLPDKEIYPVFRLDGSGTTYIFSDYLTKVSTDWKAKIGTGKALTFPRGVAATGNTGVAGLVGKVPGAIGYVASEYAASFNTQSAWLKNAAGNFVQPTSESVTAVASVGDATGMITDSEVADAYPISCFTWVVLYKEQNYAGRSRSEAEETVKLLEWLISPEAQTITTQVQCSPLPEKAVEYAKNMLKEVTYDGKALRKLast
1 -6.580PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  5  14.LAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNELNFYLDRHGEDYIRVEYPNGRYSESVYSFT--NWEDRSQYSLRMVYGPGDVSYLDDV-------IRGNVLSGYLDGHDNYVDFTGV............................................................................................................................................................................................................. 147
2 -3.300PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  8  126........................KTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV............................................................................................................................................................................................................................................ 208
3 -2.620HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  10  14..............................................................................................................AIDELGLSAQAARNLYAGKA---NAQVVNYLLESPRFLDYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHSVYQADLVTIENQFMLA--------------VKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAKGQDMTNPTITPEQVSDLIYRSVAGLDGCHRDALNTLGQALTGFFQNHLRA--------YRRKAMKRQDNEQLCALAQKGTQ... 225
4 -2.470PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371  ali follow..  6  3.ISFSFLLYSCDEKPKSGITNPSFLPNASGENNEMLIV------------MDSTKFKGKIGRELVDIYSSYISGLPQPEPRYDLRYIKPRKFNSILKHAKNIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYFVRRNQYARGQVVLYLFSENDDD-----LYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIFTDHNNIFLYYEDYSNSELKNFYDVFNSSDINIKPIRAYISKKYLRDSEKSKIFMDIQDVFPIQSNKINFKGNLAIESRGLWKLSDISA-PFLSKIIYDSKLKRVYYLGYVYAPGLKKRGLMQEISSI......... 354
5 -2.260PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  11  53.....................................................................GMHITCEKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFE---EILSTLQEEEVPSWRSLQMRQIQMPISIKEQALFIVSE.......................................................................................................................................................................................... 138
6 -2.100PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  12  109........................................................................................................................MFEDTQNGDY-DYNDLIIASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVA-----FIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSN----NGTFSYPQEKNSLFETYPGFSDWINGKV..................................... 291
7 -2.070PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  5  8TMLAAVLLAVAGANAQESAEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLD------KDNILEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETWKRVGMPAKFPEDLV............................................................................................................................................................................................... 162
8 -2.050PB006933 gi|1881301|dbj|BAA19328.1| SIMILAR TO ORF13 OF ENTEROCOCCUS FAECALIS TRANSPOSON TN916. [Bacillus subtilis]  ali follow..  9  85.....................................................................................................................AAENFLSGFINEYMNVKN--------------------DQESIEKRMQSLESYMVKQEDNHFEDEERFNVDGLKGDRELKGYSLYNVKEGDKNSLFQYVTYENLYPVEKEXXXXXXXXXXXXXXXXXXXXXXXYEKQMLLNIPVTNKGDSFAVSAVPYFT-GKEETRDEYAGEKKESIESFLQNFFEKYASEKKEEMVYMALEGNLLFGEVQSVKIFETKKG.... 303
9 -2.010PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  6  62..................................................................................................................QEIVAGELERCF------------------LAMPESVLPIVTMEERNDLCRRAGHLSGFTHTA--------------------SLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTE-KTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIF............ 244
10 -1.920PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  11  170.................................ATRIMRVLTFQRLTDVYGDVPYFDAGKGALEGEF-----------TPHYTRQDSIYMDLHDELRAAVDQFDASQPTFGGADL---------FFNGSIEQWK................................................................................................................................................................................................................. 250
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.