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Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -3.870PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  10  76................................................................................................................................................................................................................RLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDMERNDGPTLVVTDSQAIDVVHPWTRSSGRPLVPITTFSIAMAYQQNGGRLDPFVEGLEALETLQDGDRVLISEACNHQIPNKLEAALGGKKLQIEHAFGRE. 243
2 -3.760HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  16  125.........................................................................................................................................................................................................................................................................FLENITDCPMEESKKEQWSAEVKCLR-AYFFL--NLAFYYT----DVPMPLKTLSVDEANSITEVYSQVEKDLKTAIDPVHYLRGIWRLPGG 216
3 -3.430PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  19  2..........................................................................................................................................................................................................................................................................................LRRSVPKSIWRT---PRKRRKRFTVWRRSWAATSKPPSG-NLPKSGETRKQPKNEFINEKRKMRMNLPKVKM... 73
4 -2.790PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  13  2................................................................................................................................................................................................................................................................RVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLAAMI--TPAVLISGAGTLIMSTST-RVGRATDRVRGLRLIIRQLPRLSRRT------RFLMRALQ.. 113
5 -2.750PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  13  95.........................................................................................................................................................................................................................................................RLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKSS-RSFEYLLLHF-ERIDGKKVNYNCMTEK-TSQSTFPLIEKLKAGIINAKRLRIESNSKENCPIYDNPYTN. 251
6 -2.640PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  22  206.....................................................................................................................................................................................................................................SIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFN-NNLPIENGL---------LTVEAIWFLQSKMLTDTATVI-----IINNTAYVNI-NKNSVKHNNFAVNYLKSEENNWYLTGRDF... 318
7 -2.600PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  16  48..........................................................................................................................................................................................................................................................................FTSDLERRRYLILRRKTRKVWPYAKLA-----SERLSELNARLASIKSKSERRKY--TKIVQKYIEQFAAELKKLTRTEGQILVK...... 126
8 -2.530HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  24  48............................................................................................................................................................................................................................................................EKKEQESIEATKKLIAQRKELEKRKKAEESKKR-------------THRLCQIGGAVESV--LGCPIEEEDLPKLIGFLKRQEKFFSKAMQKE............ 128
9 -2.200PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  20  228.....................................................................................................................................................................................................................................................ELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETL-----------ARVYVEQKNFSKAK------QAYRILS-----LKEKSGFF--ADQIRAIKLQEN..... 313
10 -2.080HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  11  22..........................................................................................................................................................................................................................................................GKQVPENIIQPDRMENILYDYHL-----SISMGNNLSYSDNYQKEAYKNYVFEKHHIFDSSM-YTRHTEELASLYKFRSEKKHMQELLALRENKPAVSLPGDTVD.. 131

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.