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Query: gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEWGVRFYVLSKQEWKQQTIDRCGQFYCLVPSNAGFHVYLFVTMDTGENAVFVFPPHFFIRYRERYWGKHSTLSGKILRKTYLKDNLVMRYGLQPGSEERVTGARIYSASSHGVALGIVLNDEAYLFKTFITYAMTKGEQIPLYMQEKLSMERAQVEYYNTGRLADLVELEERDRKRREMLMAEERRREEKEKRRAAEPGEAYFYVEGPLTLIMPDEEIQEENTGFWQRGTTMFCDSKLIEESQREMRELASVEARIQELKNIPQKAEEKKGVFKRLFGRYFLast
1 -4.170PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  13  277..................................................................................................................................FQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKSDLLTEGKAL---GGSNYIKQ-FVRDKQDLEKSLYTLEYQIYQLRNCDPTKDVQMAANK....... 438
2 -3.250PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  13  4................................................................................................................................................................................................REGELLDEAVDFCRKRGLEFYAVNSNMPEEEADMSALRSRMYIDDRNLGVIYEMVHNRWSYNRYLNEIHD--FERSQKVSWWKRLINK.. 100
3 -3.110PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  16  47................................................................................................................................................................................................KFTSDLERRRYLILRRKTRKVWPNARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQIL-VKLIHRQTKNLRSGWRGLFD... 160
4 -2.990PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  12  168........................................................KILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFIS----------FALTITFAYNSTFLNLAQIVRINTIRPNPNPNPNEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVKHNNLKSEENNWYLTGPLLGLFVEKFFKDDVEVFSPKIPALY----VVNNSTKNIFSSVGISS-----TNNP------KLIFTFTFDNGF 380
5 -2.980PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  136.........................................................................................................................DNLSMWCDYLRMQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKGLVITDEEIIVKVLEDEYYNE-------GKTQ-CDTLILGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKN. 312
6 -2.630HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  14  70........................................................................................................................................................................NLTDSFQAMARLAENPSIKRIECANLLHTAEACIEWHA-----------WYQNEENELWQMDMIHIREGSYFEKVAQRISEIMTDEIRILRLKYETPETEKIIGYYQAVI.... 176
7 -2.550PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali follow..  14  248..................................................................................................................................FEVGNIFIDGDVLLLRMTLT-NRTQIGYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKREIQERNGG---RHFLYKLKNKSLLTAEE-----------VFRSRKQQETEDEADKILRRI..... 382
8 -2.520HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  28  8.......................................................................................................................................................................................................................DDVLVKK---FFSENRIDVPDDGF---SRRVMRRLPDRTRRISRL...................... 46
9 -2.510HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  20  3..........................................................................................................................................................................................................YLHARG-VLLLICNRELLRKDEDDMAKSTKTY-EERIRALEKKEQESIEATKKLIAQRKEL-KKAEESKKRTHRL..... 84
10 -2.450PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  14  3..................................................................................................................................................................................................RRSVPKSIW----------TPPRKRRKWRFTVWRRSWAATSKSGNLPKSGETRKQPTIKNEFINEKRKMRMNLPKVK........... 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.