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Query: gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIQYNGITLLRDEDGTPMQVNIDLRVHGTELDAFMRAHGLTAQEQSEMLRSVTGEDISPTYVAGGKVQQHVRYLPEMKRQIQTETDRLFVSPRTRPVSVIRKEFPDLLLHRIVRVLTPIPRTKAATPKAFERYCGRDTFWVRFKMQGMMNVTWCVFFTIHDEGIVLVRHLAGAGENDEDLLast
1 -4.250PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  58LMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHH------TDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIG--------GNNSFPHEIGLFIGKDVFMGLVRLPFTCQRLWKIYAEQYRCCRNKMGAILARGTSKTLE 237
2 -4.230PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  11  2............................NNMYILVKIPSFISYGNLQTATMIIGTPLSIAVHKNMGEILQQTMSITQIRIKPTDKNKLFLNINHINVSDWFKEQLNKLNQSVRMKQRQKIVRVQSSNDSILLDFSKKV-----KFNAALNLAFCIF........................ 127
3 -3.940PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  64.LQLEGDNALKNVAGSLAATEAE-----KKMKEYCAKVGIVEGSDSTFTSALKRGSLKGTYVSPEDKTVTLRYVSTLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNTTLKAINKLASEYDGMMLGFD................................................. 204
4 -3.760PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  20  254......LDWAVDSDGNPKHLDADFIR----QSGVLQQCGWTGETSTEVGRIT................................................................................................................................ 297
5 -3.210PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  16  11..........................................................................KYRQREIRTVGLMIALYEKRHPETDASTQYNDLFSYAIKRLERCHFGEDKPACKHCPIHC----YQPARREAIKAIMRWSGPRMLLRHPILAIRHL.......... 102
6 -3.130PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  13  64......FAFIRMDSGE-VDVVFYPTLKSSPLECYNEEQQKQLLDGKSIIADVAMADRSKAFVQIDEETKQVMYVPIIARNLKVLAEVMHLGTVEVNG................................................................................... 157
7 -2.870HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  16  53....DEVGILLNGNGEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIE.......................................................................................................................... 108
8 -2.580PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  10  151....................................ASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSER--------AKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEF............................................... 240
9 -2.110HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  23  152.......................................................................................................................................SQLFKIRPQARWILLALWLISFIIHQSGMLYDWHNYWNGVHD... 201
10 -2.010PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  13  151....................................ASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSER--------AKAMAVFVDTVNMTVTQQKEKVFVIPDNIEE------FDFR...................................... 243

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.