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Query: gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLILLLGFIIYLFRGERMKRDELKWEMKELGIIRDLTRKTYGHLLELASQGEVVSTWSESDLRLYRERREKTCGVLKELQQFVHTPEQQERIDSLCLLLEQKEMLLSAAMSTFDELENIGETVGEKVPAIVRQVRRQPTRNILAPAVKEAYAGTATTGEEQPEKKKSFLKKVFGGKEKKSAYRQQREQQRAASEKVPSSTTRNSGNNAAVHLLHALSREVTEKQKEQREKLSAQMDSLHLSSRALNKRLNGLVGDFDKVAGERLETRYNAIAADREKSYNTAATLALFVFLLAIVLYTLLHRDVNRCLRYRRELESSDLKNKELLQSRKNMMLTIAHDLRAPLTAIKGYAELLPGEVDEKRKDEYAVHIVRSSDYMIGLVNSLIEFYLLDAGKGKMNVTVFRPLSLFDEIVKLHTPSVRKEGLTLCTDFEGLDTVVEGDRPRIMQIANNLLSNAIKFTRKGKISLQAAYGQGELRFSVQDTGPGMTEDEQKRIFRAFERLDNARYLPGFGLGLAIVSRLTELLGGRITVESPYGTGSLFRVALPLSEVAKHGEDGENGYAEDYGLEGTYVLVIDDDRIQLDITRRMLVRNKVRCECCRTVRELMAALRERTYDLLLSDIQMPDMDGYRILDLLRSSNMENARTIPVLAVTACADDEEHYISFGFAGCLRKPFSMDELISTVSRMVVKTGKKEPDFSFILSGEKDKGRMLDIFIRETEESIHTLENALCGHDRDTIHKVLHKNLPLWETVRMNFPMARLRGLVTHTAAVWEERQYMEVGEIIHAAEKLAESARKIRESIDEEHTDYRGLast
1 -3.250PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  12  141..................................................................................................................................................................................................................................................................................................................................................................................................................................................IISAFPINLIEGFSNFLFCIVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFSSIFLSFISLTITFAYNSTFLNLA---QIVRI--NTIRPNPNPNPNEIFNFNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAY-----------VNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLL-GLFVEKFFKDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLSTN......................................................................................................................................... 366
2 -2.400PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  13  24..................................................................................................................................................................................................................................................................................................................................................................................EGNGNIITKEISVDNYSEIEGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDFPLLSIKSNNGRLAIRVIEGSSKTKYLKTSGPMDFEAQNAFSEDQLEIKISGSS---------KFPHNVKLRLGEFSVSGSG-DLDCKNLTSKVSGGDITLKGKADE................................................................................................................................................................................................................................................................................ 203
3 -2.320HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  14  2..........................................................................................................................................................................................................................................................................................................................................VVSILFQKARKVLNNERG-------------EANYFSTVVFIF--AVLLLAFIIDLFSIISTKQELDHAADQMVKQIQLFEFLSSQIEGAENISYSIDATYTSPRPSGMTNAIQ------LGTPFFITIEGDAKLGGFWNFDLVNITVVARGSGVSE................................................................................................................................................................................................................................................................................................................................ 149
4 -2.090PB048276 _Gut.Meta.Jp.0112258_ gi|163310311|dbj|BABD01000385.1||2 (- 258:885~0 complete)  ali follow..  14  4...........................................................................................................................................................................................................................................................................................................................................................................................................................................QIKLSETVMVIDVAYLNFVINDLRKYFEPLLGR---SLQTVDLALFTMYLAMDAGLKGSDNDVQVLLVYDKQSGKLEHCLPSDLGVAFKASLGEFSFMAAPSEGFVSRGDLYLDLLQIVLNAAEVK---------------KLIVVPFNEEYGKEVENVLRECALENAGHKEEAK----------DIVYFRMEEPAAPGYPLMSVL.............................................................................................................................................................................. 194
5 -2.070PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  7  2.......................................................................................................................................................................................................................................................................................................................................................................KIERLFIYCLLAGTSLLASCNSE--DMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYD-----------------------------KHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYYVLKGVSSKQYSYKENVQLNLEHQLVKFR---VKLNGDVPNLSDAKVFFYNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIEVYGLTYYYNP----DIELVKGTVYTYTVNKVDIPY.......................................................................................................................................................................................... 267
6 -1.960PB078508 A6TV41_9CLOT/1-155 PB078508; Pfam-B_78508;  ali follow..  12  1......................................................................................................................................................................................................................................................................................................................................METIKFNSEAHELF--------YKEMLARTNQTDVYYKAFFYCMGICETTRKHIEDLFDFKEIMPEHLHQPYQTGTSYKVTRMAYNLWNGYVEEGTESLTTPSS------------FACEYAAEFHQAIKI-RFSEYYRERDFEKSSLRKQIKDLTEKNVIESTN---KEHSEIE.................................................................................................................................................................................................................................................................................................................. 155
7 -1.930PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  8  2..............................................................................................................................................................................................................................................................................................................TVLSLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKEL---------IRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHVESCKYNVPSVQA----------------------------------IGKVYHRLIISIIS-EQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLEGR.................................................................................................................................................................................................................................................................................................................. 157
8 -1.870HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  13  1.........................................................................................................................................................................................................................................................................................................................LNEKGAIPMKAFDPNYKLLDEMYQDDYYPAFLVDKVKDELQKVIDLLESGETTEVIQETLDEAVCGINDLQE--EFDENDSEIETV------ARDCIGVTVAYILEWFGIPIDIE........................................................................................................................................................................................................................................................................................................................................................................................... 108
9 -1.810PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  8  11.....................................................................................................................................................................................................................................................................................................FTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFV-----------SLNDGQAMVQIASNSPYP-VQGSASNVQVKQENNGVYLSMSVQGIFISA--------TVNLVLYSGT----NNAMVTVDPNFSGNNLTM----NG-------------TLLPYSDSNVFQGT.......................................................................................................................................................................................................................................................................................................... 195
10 -1.740HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  14  5.............................................................................................................................................................................................................................................................................................................................................KVSHQLKK-LNNSSSLTNMTMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTICFIPMALK-VRRRLKADRVRGLVLFGSCRLAMIGVPLVANTILY.............................................................................................................................................................................................................................................................................................................................................................. 134
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.