current user: public

If you have questions about the server, please let us know.

Query: gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst MFRFDFRDKGMIPPILGTDNADYLERLCPVLERERIHPSGVVRLRDAAFCEERGIAHLSSSAEHMTLLENEDYRRLGHRFGMDGDVIRNGLAAFPTCMVVEYEGKVLLFDKTDSGDRMLDAFLSRLAERFFDGKRKSGSLRFYEVAPLDAAYRAKIGDGQTVSSDMVRYGICVACCDMAPTLRNFNKLRNLQRQPIPLTGEQEQIVSSLVVQPDNVRFPNVEMRVRIPVKRKGQGMNILast
1 -3.900PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  234.SYFLLAEAAEYGWISNITPKEAYELIRSSFEYFGVSEYADQYINSTTR-FDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIITQKYIAQMPYQ-----VLEIWNDHRRLGL--PFFEIPANESDLIGSDMVNVLKKDSWKNGQQWDFYPQRMRYPTTLDNADPENYQKAVEL............................................... 424
2 -3.650HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  30........................RALKRRLHAGEL-----VSPYKNLYADRTLWNTMTREQQSLQVIR------ALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYSENGGESLMRGQITELSFGSSCWQCS.............. 222
3 -3.600PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  3.................................................................................................KTVNINLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDA..................................................................... 74
4 -3.470PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  15.FHHNWMGMSQINQTTSGNFYSHRNITDQVLENAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLF----IGYPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHPFFCQTDENDYQ............ 255
5 -2.560PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  4.......................LDVLFERLSRSSFRRRFRLGVQEQQYLANKGMETILEHG--KDFIAQRLAPAEIPNDGKQTPCKGHPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILD.............................................................................................................. 106
6 -2.450PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  11  8....................................................................................................HSKYVIRIICE---GEKTEPLFFTSLCDKLLDENGGEEEWDVLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEY......................... 155
7 -2.440PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  15  16..............................................LLYIFDRVQFPLANIQLTQFIMENDNYFMLQQFIGELKE---------SSFIMEQEKDTGQLFMITDQGKKTLTYFISRIPEEKIDHLLNIKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDMCEKWRSDAQELYGQIINLLI............................. 174
8 -2.400PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  23  143.FHEKFIKGHVTPKL---DSVDYSEKLTEIIRRNDIQSVTIVRM-EVPCC--GGLEMAAKKALQDS............................................................................................................................................................................ 205
9 -2.390PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  66..........................................KFLQIDYCIEGCYEVEYQNGTVSFLGE-----------GDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMEL............................................................ 190
10 -2.250PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  97...............................................................................................SETTYAKVWQAIMFEDTQNGDYDYNDLIHVKNTASNHAYQHPTETWQIQPIALGSTKTIKLGRQGFINTVNDNDPIRYKLASTN-SAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNGTFSYPQEKNSL 276

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.