current user: public

If you have questions about the server, please let us know.

Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .
# Score Template Links and tools%idFirst MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVKLast
1 -6.180sp|Q8NG31|CASC5_HUMAN Protein CASC5 OS=Homo sapiens GN=CASC5 PE=1 SV=3  ali   1........NDMDITQSCMVEIDNESALEDKEDFHLAGASKTILYSCGQDDMEITRSHTTALECKTLLPNEIAIRPMDKTVLFTDNYSDLEVTDSHTVFIDCQA...................................................................................................... 95
2 -6.140sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=2 SV=1  ali   12  1..........MSFICGLQSAARNHVFFRFNSLSN-------------------RKCNTLASTSRGCHQVQVNHIVNKYQGLGVNQCDRWSFLPG-NFHFYSTFNNKRTGGLSSTKSKEIWRITSKCTVWNDAFSRQLLIKEVTAVPSLSVLHPLSPASIRAIRNFHTSPRFQAAPVPLLLMILKPVQKLFAIIVGRGKW---WQA 175
3 -6.080sp|Q9P2U8|VGLU2_HUMAN Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=1 SV=1  ali   38  27.......................................................................................................................................................................................TTKSY-GATTQANGGWPSGWEK 47
4 -5.830sp|Q9Y6A1|POMT1_HUMAN Protein O-mannosyl-transferase 1 OS=Homo sapiens GN=POMT1 PE=1 SV=3  ali   14  32......................................................................................................................................................................................LRPLTY-GDKSLSPHEWKDSW.. 56
5 -5.170sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3  ali   13  1LISAGTQDSEWGCPTSLEGQLGSVIIFYE-------------------------PLQPPQVKALYLAGPNCLSPWKCQESDMADLPGNILLYYTAKACKNSICL..................................................................................................... 79
6 -5.000sp|O60393|NOBOX_HUMAN Homeobox protein NOBOX OS=Homo sapiens GN=NOBOX PE=1 SV=4  ali   13  7LTLPPPEDSLFMFPCGPSGGTSQGYC--------PGASSGQILMQPPAGNIGTASWSDPCLPELPFPGPFCPQALGHPPGGDG.......................................................................................................................... 81
7 -4.790sp|Q8IUH4|ZDH13_HUMAN Palmitoyltransferase ZDHHC13 OS=Homo sapiens GN=ZDHHC13 PE=2 SV=3  ali   18  13......................FQIAFLGLTSHERISLQKQSKHMKQTLSLRKTPYNLGFMQNLA............................................................................................................................................ 55
8 -4.680sp|Q5H8A4|PIGG_HUMAN GPI ethanolamine phosphate transferase 2 OS=Homo sapiens GN=PIGG PE=1 SV=1  ali   15  56.........TVDISAGFVGLDTYVEIPA................................................................................................................................................................................. 74
9 -4.380tr|E7EWI7|E7EWI7_HUMAN Uncharacterized protein OS=Homo sapiens GN=ANKRD17 PE=4 SV=1  ali   11  36......................................................................................................................................................................................LPMTHFGGTFPPAQSTW...... 52
10 -4.330sp|Q86WI1|PKHL1_HUMAN Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2  ali   15  4..................................VNNYEAGIETKRILAPYVGGETNGAVIKNAKIVG----HLDELGMGSAFCTAKGLVLPFSEGLTVSSVHFMNFDR................................................................................................ 76

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.