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Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVKLast
1 -7.0701nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  11  18......KGDTVIVHKGQTGKVLLALPRDQK-VEGVNVITKNVKPSMTNPQGGQEQRELALASKVALVDPETGKATRVRKQIVDGKKVRVAVASGK.............................................................................................................. 112
2 -6.7603j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  13  7......RDDEVIVDKGKRGKVKNVLSSGKV-EGINLVKKHQKPVPALNQPGGIVEKEAAIVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSE.............................................................................................................. 101
3 -6.7603aq3_A mol:protein length:211 6b protein  ali model follow..  134FLAILMSQLFIRIRTDVIRGQGYGWYARLGNYVEEGEDNEGIENEEEEEEEEEETRE-SDLIHYPIVALGS...................................................................................................................................... 206
4 -6.6903j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  12  5......KGDKVMVDKGKQGTILAAFPKKDR-VEGVNMVKKHSKPTQANPQGGISNQEAPIVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQ.............................................................................................................. 99
5 -6.6104wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  10  6.......GDNVKVDKGKEGKVIATLPKKDR-VEGVNIMKKHQKPTQLNPEGGILETEAAIVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN........................................................................................................ 105
6 -6.2204v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  13  10.......GDTVLVYKGRVGKVKEVLPKKYA-VEGVNIVKKAVRVSPKYPQGGFIEKEAPLASKVRPICPACGKPTRVRKKFLENGKK-IRVCAKCGGAL.......................................................................................................... 106
7 -6.1904nk6_A mol:protein length:491 Poly(beta-D-mannuronate) C5 epimerase  ali model follow..  248FYCYETRDFVVK-GNTYRDNIVYGIDPHDRSHGLIIAENDVYGTKKKHGIIISREVDNSFIFRNKSLDRNSVGNIVAYNEIYQNHTDGITLYESGNNLLWNRVIANRRHGIRVRNSVNIKLYENVAMA............................................................................. 384
8 -6.1502w0c_P mol:protein length:104 PROTEIN P3  ali model follow..  11  17....GNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKT.................................................................................................................................... 85
9 -5.8005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  72.......GDTVKVEKGKIGEISKIHKHNST-IKDLNFKTKHVKSKEEGEQGQIIKIEAAISSNVMLILKEQEVADRVGHKILEDVRK-VRYLIKTGEIV.......................................................................................................... 168
10 -5.7904o4a_A mol:protein length:170 Lipoprotein, putative  ali model follow..  16  21.....TTDTIYLIPEEYEGDLIVVYNVPGAELLPKEEEFSVVTFAADGTAVTSTKNMKFGTVNDLYY------------------------KEGQRTKIDSSCIHFSSTGSRTENSWEFPFAN.................................................................................. 117

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.