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Query: gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GCETEGEDIDMRFETCTVSFVQQELRSSYEVYFNGEKSINRSTSVKKNSTLKLEVYKIGEKQPELSQEITLDNSKDIELLKLVGRDIAISSSLEEYTTFTPIISYFNPNTDLYTVTFNNGELSNKVKNYIAEADLSGTLKIVRNVDGQVLYEQDMTIMPEGQFSLMQLSDTDFLDISDGEEADPESRQYTKIRFFYTADAFPGHDKLKLVVYLMDLDAMQFTAPIATIDLEAGKISEYIQIDNDAFGQGVVNGVYDLIDESGNMIVNNLEHFNTSIPIGTSDNKFMTFRFMDPSHQGGDNVQCNFILSTPWKLast
1 -7.9204dkd_C mol:protein length:292 Macrophage colony-stimulating factor 1 receptor  ali model follow..  26.CVGNGSVEDGSSSILSTNNATFQNTGTYRCTEPGDP-------LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALL----PCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHR------AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP-LVRIRGEAAQIVCSASSVDVN---FDVFLQHNNTKLAIPQQSDFH-----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS................................................ 286
2 -7.2005a9d_A mol:protein length:189 SOLUTE CARRIER FAMILY 15 MEMBER 1  ali model follow..  11  13..........................................................................................................GNNNMTVHFPGNSVTLAQQTDTFMTFDIDKLTSINISSSGSPGVTTVAHDFEQGHRHTLLVWNPSQYRVVKDGLNQKPEK-GENGIRFVNTLN-----EMVTIKMSGKVYENVTSHNASGYQFFPSGEKQ--YTINTTAVAPTCLTDFKSSNLDFGSAYT.............................................. 166
3 -6.8502o26_X mol:protein length:290 Mast/stem cell growth factor receptor  ali model follow..  34.CIDPDFVRENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLV-----------GLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS---VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG................................................... 290
4 -6.8005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  5GCSRRDILDDYPVSGVDIKLDWDGVTDQ------------------LPEGVRVIFYPKNGDGRKVDKEMKVPPGR--SVVVYNYNTESIRIRGEESYETIEAYTNGLGIEGTEKMVWSPDSLYVLNIDELKIEKSEEVLRL-DWKLESVVKKYSFAVEAKGLEYVATVVGS-IDGLSDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFFTAFKQVKEMTMPTRMSTSERETSEKGAIILILKFIKTDNTVQEATIDVTEENAGTGEDGKPTPPPEIELPPDDKIEVDKPETPPNPDGGGGMGGNV---DGWG 308
5 -6.5705kj4_A mol:protein length:234 Protocadherin-15  ali model follow..  12  34..DADPPGMPASRVRYRVD--FPYPASIFDVEDSGRVVTRVNLNEEPTTIFKLVVVAFDDGEPVMSSSATVR-------ILVLHPGEIPRFTQEEYR---PPPVSELAARGTVVGVISAAAINQSIVYSIVAGNEEDKFGI-NNVTGVIYVNSPLDYETRTSYVLRVQADSLEVVLANLRVPSKSNTAKVYIEIQDENDHPPVFLE.......................................................................................................... 228
6 -6.5505mza_B mol:protein length:186 Intercellular adhesion molecule 1  ali model follow..  11  21.CSTSCELLLPGNNRKVYELSNVQEDSQPMCYSNCPD-------GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTL----RCQVEGGAPRANL---------------TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFG...................................................................................................................................... 186
7 -6.5104wrl_A mol:protein length:286 Macrophage colony-stimulating factor 1 receptor  ali model follow..  23.CVGNGSYSDGSSSILSTNNATFQNTGTYRCTEPGDP-------LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALL----PCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHR------AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIP-LVRIRGEAAQIVCSASSVDVN---FDVFLQHQNTKLAIPQQSDFH-----NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVGTK................................................... 280
8 -6.2701iam_A mol:protein length:185 INTERCELLULAR ADHESION MOLECULE-1  ali model follow..  12  21.CSTSCELLLPGNNRKVYELSNVQEDSQPMCYSNCPD-------GQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTL----RCQVEGGAPRAQL---------------TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQT........................................................................................................................................ 184
9 -6.2405lf5_A mol:protein length:500 Myelin-associated glycoprotein  ali model follow..  244.CGADSN-AVAKSLYLDLEEVTPGEDGVYACLAENAY-------GQDNRTVELSV-MYAPWKPTVNGTVVAVEGETVSI----LCSTQSNPDPILTIFKEKQILATVIYESQLQLELPAVTPEDDGEYWCVAENQYG--------QRATAFNLSVEFAPIILLESHCAAARDTVQCLCVVKSNPEP----SVAFELPSRNVTVNETEREFVY--SERSGLLLTSILTIRGQAQAPPRVICTSRNLYGTQSLELPFQGAHRAAA................................................. 494
10 -6.2301zxq_A mol:protein length:192 INTERCELLULAR ADHESION MOLECULE-2  ali model follow..  11  24.CSTTCN-LDEQAQWKHYLVSNISHDTVLQCHFTCSG-------KQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTI----ECRVPTVEPLDSL---------------TLFLFRGNETLHYETFGKAAPAPQEATATFNEDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEI........................................................................................................................................ 191

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.