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Query: gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKHTLKGWLVDNAVTVDNKEDKILMLESAGSLTLEDILSEMKKEDTGLREETIEHAVKLYHRVLSDLMLSGYSVNTGLFRAVPQFRGVVDGGQWDQKKNSIYVSFTQDKDLREAIAQTSVNILGEKRDAMYIIGGEDAATRATDGMATAGRNYTLNGRLIKVVGEHESVGITLTDASGKVSKLPNDMLVVNNPSQLIILLPSDLTDGHYTLTVTTQYSGTNTLLKTPRSTSKVITIGQSGGSEGGNTSDGNLDENPLGLast
1 -96.3004fmr_A mol:protein length:265 uncharacterized hypothetical protein  ali model follow..  54  3.KNVLKAWLVDNTVTTDDKTDKIFQLETTRSIDKEIILDRMVAKNPGVRRETMALGIELMEEVVAEALMNGESVNTGLFRGVAQFRGVAKQNAWDAATNSIYVSLTQGKALREAIKDTRVDVLGERPTKFYIGSGQDATTRATDFSATAGRNFTLFGKNLTVAGTDPSVGVTLASAATGTTKIDNDMIVLNEPSRLIILLPASLEDGEYMLTVTTQYRGGGGLLKTPRSTSHTIYIGGAPETGGSTGSDGDLNENPLG 265
2 -14.8001ihf_B mol:protein length:94 PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF))  ali model follow..  16  1...............................MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIGFGSFSLHYRAPRTGRNPKTGDKKYVPHFKPGKELRDRANI............................................................................................................................................. 92
3 -14.8001ouz_B mol:protein length:94 Integration Host Factor Beta-subunit  ali model follow..  16  1...............................MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIGFGSFSLHYRAPRTGRNPKTGDKKYVPHFKPGKELRDRANI............................................................................................................................................. 92
4 -13.5002np2_A mol:protein length:108 Hbb  ali model follow..  14  2........................SFSRRPKVTKSDIVDQIALNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFGTFEVRKRKGRLNARNPQTGEYVKVLAYFRPGKDLKERVWGIK........................................................................................................................................... 107
5 -13.4005eka_A mol:protein length:96 DNA-binding protein HU  ali model follow..  17  1..........................AAKKTVTKADLVDQVAQA-TGLKKKDVKAMVDALLAKVEEALANGSKVQLGFGTFEVRKRKARTGVKPGTKEKTQYPAFKPGKALKDKVKK............................................................................................................................................. 96
6 -13.3005l8z_A mol:protein length:96 DNA-binding protein  ali model follow..  14  1.............................GHMSKKELAAQIAEKTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIGFGKFAVTERAARDGRNPSTGETSKSAKFKAGKQLKTDLNN............................................................................................................................................. 95
7 -13.3001wtu_A mol:protein length:99 TRANSCRIPTION FACTOR 1  ali model follow..  14  1...............................MNKTELIKAIAQD-TELTQVSVSKMLASFEKITTETVAKGDKVQLGFLNIKPVARQARKGFNPQTQEASVGVSVKPGESLKKAAEGLK........................................................................................................................................... 93
8 -13.2001exe_A mol:protein length:99 TRANSCRIPTION FACTOR 1  ali model follow..  15  1...............................MNKTELIKAIAQD-TGLTQVSVSKMLASFEKIITETVAKGDKVQLGFLNIKPVARQARKGFNPQTQEASVGVSVKPGESLKKAAEGLK........................................................................................................................................... 93
9 -13.0002ndp_A mol:protein length:99 Histone-like DNA-binding superfamily protein  ali model follow..  19  1.........................MAKIKSLSAAEYLKEMADE-TNIKVQDIRLVVTSLQKVLAKELATTGEVRLDIGKFKLVTTKPRTGINPKTKQKGKKIKLTVSKILTDAVDSHK........................................................................................................................................... 99
10 -12.7001ihf_A mol:protein length:99 PROTEIN (INTEGRATION HOST FACTOR (ALPHA) (IHF))  ali model follow..  15  2..............................ALTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLGFGNFDLRDKNQRPGRNPKTGEDRRVVTFRPGQKLKSRVENAS........................................................................................................................................... 95
11 -12.6003rhi_A mol:protein length:93 DNA-binding protein HU  ali model follow..  13  1............................SNAMNKTELIKNVAQN-AEISQKEATVVVQTVVESITNTLAAGEKVQLGFGTFEVRERAARTGRNPQTGEESKVPAFKAGKELKEAVK.............................................................................................................................................. 93
12 -12.5004n1v_A mol:protein length:100 DNA-binding protein HU-beta  ali model follow..  13  1...............................MSKKELAAQIAEKTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIGFGKFAVTERAARDGRNPSTGETSKSAKFKAGKQLKTDLNN............................................................................................................................................. 93
13 -12.4004yey_A mol:protein length:91 DNA-binding protein HU-alpha  ali model follow..  13  1..............................AMNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLGFGTFKVNHRAERTGRNPQTGKEANVPAFVSGKALKDAVK.............................................................................................................................................. 91
14 -12.4004dky_A mol:protein length:106 DNA-binding protein HU homolog  ali model follow..  10  1...............................MNKAELIDVLTQK-LGSDRRQATAAVENVVDTIVRAVHKGDSVTIGFGVFEQRRRAARVARNPRTGETTSVPAFRPGAQFKAVVSGAQ........................................................................................................................................... 93
15 -12.3001riy_A mol:protein length:90 Hu DNA-binding protein  ali model follow..  11  1...............................MNKKELIDRVAKK-AGAKKKDVKLILDTILETITEALAKGEKIQIGFGSFEVRKAAARKGVNPQTRKPRKVPKFKPGKALKEKVK.............................................................................................................................................. 90
16 -12.3001b8z_A mol:protein length:90 PROTEIN (HISTONELIKE PROTEIN HU)  ali model follow..  12  1...............................MNKKELIDRVAKK-AGAKKKDVKLILDTILETITEALAKGEKVQIGFGSFEVRKAAARKGVNPQTRKPRKVPKFKPGKALKEKVK.............................................................................................................................................. 90
17 -12.2001p51_A mol:protein length:94 DNA-binding protein HU  ali model follow..  12  1...............................MNKGELVDAVAEK-ASVTKKQADAVLTAALETIIEAVSSGDKVTLGFGSFESRERKAREGRNPKTNEKTRVPAFSAGKLFREKVAPPK........................................................................................................................................... 93
18 -12.1004yf0_A mol:protein length:91 DNA-binding protein HU-alpha  ali model follow..  12  1..............................HMNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKKGDALQLGFGTFKVNHRAERTGRNPQTGKEANVPAFVSGKALKDAVK.............................................................................................................................................. 91
19 -12.0001hue_A mol:protein length:90 HU PROTEIN  ali model follow..  16  1...............................MNKTELINAVAET-SGLSKKDATKAVDAVFDSITEALRKGDKVQLGFGNFEVRERAARKGRNPQTGEESKVPAFKPGKALKDAVK.............................................................................................................................................. 90
20 -11.9005lvt_A mol:protein length:91 DNA-binding protein HU  ali model follow..  21  2...............................ANKQDLIAEVAAK-TGLTKKDSEKAVNAFGEVVTEFLAKGEKVQLGFGTFETRERAAREGRNPQTGEATVVPAFKAGKALKDAVK.............................................................................................................................................. 91
21 -11.9005fbm_A mol:protein length:99 DNA-binding protein HU  ali model follow..  18  2...............................ANKQDLIAKVAEA-TELTKKDSAAAVDAVFSAVSSYLAKGEKVQLGFGNFEVRERAARKGRNPQTGEESKVPAFKAGKALKDAVK.............................................................................................................................................. 91
22 -11.8004qjn_A mol:protein length:98 DNA-binding protein HU  ali model follow..  17  1...............................MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQNSLAKGEKVQLGFGNFEVRERAARKGRNPQTGKESKVPAFKAGKALKDAVKL............................................................................................................................................. 91
23 -11.7004yew_A mol:protein length:90 DNA-binding protein HU-beta  ali model follow..  14  1...............................MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALGFGTFAVKERAASTGRNPQTGKEAKVPSFRAGKALKDAVN.............................................................................................................................................. 90
24 -11.7002o97_B mol:protein length:90 DNA-binding protein HU-beta  ali model follow..  14  1...............................MNKSQLIDKIAAG-ADISKAAAGRALDAIIASVTESLKEGDDVALGFGTFAVKERAARTGRNPQTGKEAKVPSFRAGKALKDAVN.............................................................................................................................................. 90
25 -11.6002iie_A mol:protein length:204 Integration host factor  ali model follow..  15  43...........................GSGGLTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLGFGNFDLRDKNQRPGRNPKTGEDRRVVTFRPGQKLKSRVENAGGGERIEIRGFGSFSLHYRAPRTGRNP--KTGDKVELEGKYV.................................................................................................. 178
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.