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Query: gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MENGIEEILKEHEALCSRVFHLLNTGNPQTKDIELIIPKVKELFGMLEAVNTKQITAQQYNGLLNVMSEWNAIFSYFNIKMVPCRLRPFLWNSPKVAVKRIPRQCIEGIVVSTKMQKTVVIEVERTKKHPKYGKTVQYTKKYKIHDPLEECSVGDRVLAHETRHFSKTKYFRFYRKLYLast
1 -65.9005o5j_Q mol:protein length:98 30S ribosomal protein S17  ali model follow..  43  2....................................................................................ADQKGPKYTPAAEKPRGRRKTAIGYVVSDKMQKTIVVELEDRKSHPLYGKIIRTTKKVKAHDENGEAGIGDRVSLMETRPLSATKRWRLVEIL. 94
2 -63.9005oql_v mol:protein length:161 40S ribosomal protein S11-like protein  ali model follow..  20  5LTVQSERAFLKQPHI-----------------------------------LNSKVKVKSTRPGKGGRRWYKDVGLGFKTPKTAIEGHYIDKKCPFTGMVSIRGRILTGRVVSTKMHRTIIIRREYLHYIPKYNRYEKRHKNLAAHVSPARVEEGDMVVVGQCRPLSKTVRFNVLRVL. 148
3 -63.6005xxu_L mol:protein length:161 Ribosomal protein uS17  ali model follow..  23  1.......................................MATADVQTERAFQKQDGVSSLGRKKRTQRYWKDVGLGFQTPRLAKESKYVDKKCPFTGNVSIRGRVIKGMVISTKMKRAVVIRRNYLHFVPKYSRFEKRHKNVTCHLSPEQVKEGDIVTAGQCRPLSKTIRFNVLKVE. 146
4 -63.6006GSN Entity 36(prereleased)  ali follow..  22  1.......................................STELTVQSERAFQKQPHIPKAKANRKTKRWYKNVGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTRMHRTIVIRRDYLHYVPKYNRYEKRHKNVPAHVSPARVQVGDIVTVGQCRPISKTVRFNVLKVA. 142
5 -63.5004d5l_L mol:protein length:158 40S RIBOSOMAL PROTEIN US17  ali model follow..  20  7.....ERAYQKQPTIFQ----------------------------------NKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPRDVQIGDIVTVGECRPLSKTVRFNVLKVT. 146
6 -63.3003j80_L mol:protein length:156 uS17  ali model follow..  22  4.........................................ELTVQSERAFQKQPHIPKAKANRKTKRWYKNVGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTRMHRTIVIRRDYLHYVPKYNRYEKRHKNVPAHVSPARVQVGDIVTVGQCRPISKTVRFNVLKVA. 143
7 -63.0003j7a_V mol:protein length:161 40S ribosomal protein uS17  ali model follow..  21  4.........................................TLDVQHERAYQKQEGAKIKKGSKSYIRYWKKVGLGFATPKEAKEGVYVDKKCPFTGNVSIRGRILKGMVISNKMKRTIIIRRNYLHYVKKYNRFEKRHKNIPCHCSPCDVKEGDIVTVGQCRPLSKTVRFNVLHVE. 146
8 -62.8003j9y_q mol:protein length:84 30S ribosomal protein S17  ali model follow..  40  1..................................................................................................MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVV. 79
9 -62.1005jpq_y mol:protein length:157 uS17  ali model follow..  20  1..........................................MDTQIQRAYQKQDGVFLNSKTSAGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHSPCFSVKEGDILVAGQCRPISKTVRFNALQVV. 142
10 -62.1005ll6_X mol:protein length:156 40S ribosomal protein S11-A  ali model follow..  24  4.........................................ELTVQSERAFQKQPHIPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVPAFRVQVGDIVTVGQCRPISKTVRFNVVKVS. 143
11 -62.1005nd8_q mol:protein length:87 30S ribosomal protein S17  ali model follow..  45  2.................................................................................................SERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDIVKIQETRPLSATKRFRLVEIV. 81
12 -62.0006ha1_q mol:protein length:87 30S ribosomal protein S17  ali model follow..  45  2.................................................................................................SERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVV. 81
13 -61.9005v93_q mol:protein length:135 30S ribosomal protein S17  ali model follow..  32  2...............................................AEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGPKHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDEDSVAGIGDRVSLMETRPLSATKRWRLVEIL. 131
14 -60.4001eg0_G mol:protein length:93 PROTEIN (S17 RIBOSOMAL PROTEIN)  ali model follow..  50  1.................................................................................................SERNQRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIV. 80
15 -60.4005jb3_R mol:protein length:113 30S ribosomal protein S17P  ali model follow..  32  3..........................................................................RDIGLRVQPPAEKCDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPCNAKVGDKVLIAETRPLSKTKHFVVVAVL. 106
16 -59.4005xyi_L mol:protein length:155 Uncharacterized protein  ali model follow..  21  5.............................................QTERAFQKQPQLKKHANAEKKQRYVKSIGLKIETPKTAEEREYIDAKCPFTGTVSIRGRVLRGVVVSTKMRRTIIIRRDYLQWIRKYKRFEKRHTKIPAHSPAFLVKEGDLVTVAECRPLSKTVHFNVIHVK. 141
17 -59.1005opt_X mol:protein length:173 40S ribosomal protein S11, putative  ali model follow..  18  14.........................................DLTLQHEKAYQRQTAVKKHVNMSGHIRYSKKIGLGFKTPKSAINGKYIDRKCPFTSDVSIRGRILRGVVHSTKMKRSIVIRRDYLHFIRKYQRYQKRHRSLTVHCSPCDPKPGDEVIVGQCRPLSKTIRYNVLEVV. 158
18 -59.1006az1_U mol:protein length:173 ribosomal protein S17  ali model follow..  19  14.........................................DATIQHQKAYQRQTAVRKHVNKSGHIRYAKKIGLGFKTPAKALNGKYIDRKCPFTSNVVIRGRILRGIVHSTKMHRTIVIRRNYLHFIKKYQRYQKRHKSLAVHCSPADPKQGDEVVVGQCRPLSKTIRYNVLEVV. 158
19 -57.6004jv5_Q mol:protein length:99 30S ribosomal protein S17  ali model follow..  48  1.....................................................................................................PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLV. 76
20 -57.2001fjg_Q mol:protein length:105 30S RIBOSOMAL PROTEIN S17  ali model follow..  48  1....................................................................................................MPKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLV. 77
21 -56.5001i94_Q mol:protein length:104 30S RIBOSOMAL PROTEIN S17  ali model follow..  50  1.....................................................................................................PKKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEERYKVGDVVEIIEARPISKRKRFRVLRLV. 76
22 -55.0005mmj_q mol:protein length:165 plastid ribosomal protein uS17c  ali model follow..  24  8....................................................LKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPE. 132
23 -47.8005aj3_Q mol:protein length:130 MITORIBOSOMAL PROTEIN US17M, MRPS17  ali model follow..  28  3...............................................................................................IARSSVHAKWVVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALPPRTKHVKHELAEIIF 86
24 -47.5003jd5_Q mol:protein length:130 28S ribosomal protein S17, mitochondrial  ali model follow..  30  3...............................................................................................VVRSSVHAKWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALVPRTKHVKHELAEIVF 86
25 -9.9003iuw_A mol:protein length:83 Activating signal cointegrator  ali model follow..  12  1.............................................................................................................GMEQQHPTIHTLKIETEF----FKAVKERRKTFEIRKNDRNFQVGDILILEEYMNGMYLDDECEAEVIY 65
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.