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Query: gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MHPPRRVSEFLLSVLPLLPPFSIVICKGNAIYANTQTVKGLSLFPYMSHSVKERLFFKARAISPMTIDSSALKSLKKVIPVDFLLGFYSLRVTIYVILLLLTHKISWSAYFQCLNCIYRILRIFKMHGITLast
1 -8.2205o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A  ali model follow..  12  2...........................ANRTVKDAHSIHGYLVEKIIRTRIYESKYWKEKAMELRFVGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNE---FKYVRMLGALY............ 106
2 -6.8304kbq_A mol:protein length:139 E3 ubiquitin-protein ligase CHIP  ali model follow..  12  17..........................QGNRLFVGRKYPEAAACYG-ITRNPLVAVYYTNRALCYLKMQEQALADCRRALELD................................................ 75
3 -6.6002mx1_A mol:protein length:189 Threonylcarbamoyl-AMP synthase  ali model follow..  22  15.......................VLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDGLILIAANYEQLKPYIPVTFVFDSLAVRVTDHPLVVALCQAYGKPLVSTSAN............... 140
4 -6.5603q47_B mol:protein length:137 STIP1 homology and U box-containing protein 1  ali model follow..  12  15..........................QGNRLFVGRKYPEAAACYG-ITRNPLVAVYYTNRALCYLKMQEQALADCRRALELD................................................ 73
5 -6.4804qn8_A mol:protein length:155 VipE  ali model follow..  16  62......IKDFVLTIGPTLDSEIL--GDRNTFMRGSSLEKAFLAFEMAHYPTKAEEHFNSTRVRTEFPGENDIDNLKAVI-LNPIIAFFQ......................................... 154
6 -6.3501ux6_A mol:protein length:350 THROMBOSPONDIN-1  ali model follow..  19  282.......YRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYDKTYLGLFVFSQEMVFFLKYECRDP.................................................................. 344
7 -6.3301i3q_I mol:protein length:122 DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE  ali model follow..  16  3.....................TFRFCRNNMLYPREDKENNRLLFECRTCSYVEEA--LITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI........... 109
8 -6.2303qt1_I mol:protein length:133 DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerase III subunit RPC10  ali model follow..  16  17.....................TFRFCRNNMLYPREDKENNRLLFECRTCSYVEEA--LITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHR........... 123
9 -6.2201bgw_A mol:protein length:793 TOPOISOMERASE  ali model follow..  15  36.....................TLVLTEGDS--ALSLAVAGLAVV-YGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSHIKGL................ 129
10 -6.2103h0g_I mol:protein length:113 DNA-directed RNA polymerase II subunit RPB9  ali model follow..  10  3.....................NFQYCINNMLYPREDKVDRVLRLACRNCDYSEIAATSKSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA........... 109

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.