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Query: gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSTSEKRKGMQTDMPELQAMISQRIQEQNYREVLKGVTAFPWCTDDPCVFRTAAGNLWIAVGHVNRKSEVPKFSYKNFLCAYLLGNAEDGVAAYLDLQAAAWKGVELVMFSSHADGLSALYGDGRANDRDLLYRFFGRNYVFAVGFRKKEEKEQASAGDKIFIASVDAVGFGEIDKDGKLAVINKIMSYEQFFDDEDLKPMWGALAVKLFILKCNGYRESAKDRKALDILLHDMMKLCKSMELTAGLDDQKRKHPESAGINPQMALLKNEAMVKVHNGMDEKVKSNLPLLEWAVNHLPAKLLQEFGTFVESVPQIKEPTAYDNLMSLESVLKEMDRLFKKAAEEENLSLTKNSMTDGLast
1 -8.0705m41_A mol:protein length:757 Nigritoxine  ali model follow..  26  607....................................................................................................................................................................................................................................................LTYIEGKKTGDFENKYGNEMEWLVRKFKTK-KNDFDLKIPDNIHF-EKGDHSLTTYTLQDFITVVENAPKVKDEFALNNIVSMRATAKNMDTLFLDVASTNYMTLMGQVLTNG 733
2 -7.6603jcr_O mol:protein length:240 SmB  ali model follow..  19  2.........................................................................................................................................................................................................................................................................................TVGKSSKMLQH-IDYRMRCILQDGRIFIGTF------KAFDKHMNL--ILCDCDEFRKIKPKNSKQAEREEKRVLG 68
3 -7.3905y31_B mol:protein length:544 Leucine-rich glioma-inactivated protein 1  ali model follow..  20  19..........................................................................................................................................................................................................................................................KPKCPAVCTCTKDNALCENARSIP------RTVPPDVISLSFVRSGFTEPSLQLLLFTSNSFDVI-SDDAFIGLPHLEYLFIENNNIFRGLKSLIHLSLANNNLQ.. 132
4 -7.2905fsa_A mol:protein length:490 CYP51 VARIANT1  ali model follow..  18  213.................................................................................................................................................................................................................................................ATYMKEIKLRRERGDIDPNRDLIDSLLIHSTYKDGVKMDQEIANLL-TSAWFLLHLPDVIYQEVVELLKEKGGDLNDLTYEDLQKLNNTIKETLRMHRKVTNPLRIPETNYIVPKG 357
5 -7.2405v5z_A mol:protein length:537 Lanosterol 14-alpha demethylase  ali model follow..  18  255.................................................................................................................................................................................................................................................ATYMKEIKSRRERGDIDPNRDLIDSLLIHSTYKDGVKMDQEIANLLSTSAWFLLHLPDVIYQEVVELLKEKGGDLNDLTYEDLQKLNNTIKETLRMHRKVTNPLRIPETNYIVPKG 399
6 -7.0303b98_A mol:protein length:475 Prostaglandin I2 synthase  ali model follow..  14  216.....................................................................................................................................................................................................................................................EKLWKWLTPSGLDRKPREQSWLGSYVKQLQDEGIDAEQGNAGPAAFWVMGYL-PEALRAVREEIQGGKHLRLEERQKNTPVFDSVLWETLRLTRDVTQDKKICLSNGQLRRG 351
7 -6.9601y4c_A mol:protein length:494 Maltose binding protein fused with designed helical protein  ali model follow..  24  396...................................................................................................................................................................................................................................................................LQEAQKTLQQAQELAKKGGGEEQLKRALKRADWAAQELAKK-----GGGGEEL--LKQA-----LQQAQQLLRQAQELAKKGGGEE---LLKQALQQA 481
8 -6.8802o7r_A mol:protein length:338 CXE carboxylesterase  ali model follow..  17  32....................................................................................................................................................................................................................................................ITRPIQIPSTAASPDPTSSSPVLTKDLALNPLHNTFVRLSAKLPLVVYIFHDFCCEMAVHAGVVIASVPEHRLPAAYDAMEALQWIKDSRDEWLTNFADFSNCFIMGES.... 169
9 -6.8606f45_A mol:protein length:204 Long tail fiber distal subunit  ali model follow..  14  88.......................................................................................................................................................................................................................................................................................DRRIKKDIKAFENPVDIL-STI-ESAGLIAQEVEAV--PRLYNGITANTAAINVHTKEINEL--KKQLKELKDIVKF. 195
10 -6.7202v3j_A mol:protein length:258 ESSENTIAL FOR MITOTIC GROWTH 1  ali model follow..  21  44..................................................................................................................................................................................................................................................VLAMASLETHKISSNGPGGDKYVLLNCDDHQGLLKKMGRDISEARPLLDSPINK--AGKLQVYGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITD. 169
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.