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Query: gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DEMFDRETTEVLPSVISEDRTLYTDTEYLISKPVFVTNGATLTIQRGALLKALPASGQGKATIVITKGCKIVANGTEDAPIVMTALIKEPGSWDGVIVLGKAPVSYECETLYCGTVATDISYGGSEENDDSGSLQFVRVEYAGAAGGAVTFDGVSRGTTIDHCQSYCSGGDGFMFNGGTVNAQYLISTGASQNGLCFNEGYTGKLQYVMATAPIRKSVWSVVSCNGTGKLEVPSFYTHPVIANLSTAHDNKSHGRRYPIAVSAYSRLTLVNSSTREAVADDDIPVQLIGGQPGALPGIDYILINATREVTSLTPDRFVLDTFFERTDYEGAVAPDVMKDRDWTKAGWVRQGKKPLast
1 -9.1204mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A  ali model follow..  11  125DRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMTDGAQVEWGPTEDISYS-----------GGTI--MNGALNEEGTKAK-----------NLPLINSSGAFAIGNSN--NVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQIISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKILNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNT..................................................... 415
2 -8.3605gkd_A mol:protein length:726 AlyGC  ali model follow..  10  1.......................................ADLLVKTPEAYDQALKKAKPGDDIILANGTLFEAKGNENKPITLRGQTP-----GKVFLTGQSNLRLAGEHLIVSGGEVIAFRRNKDVLASHSRVTQVVID-PEKFEQDSWVMVYGRHNRFDHNHLVGKRNKGVTMAVRLTTESSQQNHHRIDHNYFGPRGSNGGETLRIGTSHHSLTDSFTLVENNYFDRCNGEVEIISNKSGKNSIRNNVFFESRGTLTLRHGNGNIVENNVFFG.............................................................................. 254
3 -7.3502w7q_A mol:protein length:204 OUTER-MEMBRANE LIPOPROTEIN CARRIER PROTEIN  ali model follow..  12  10.AIDDSAAVQRLTGLLNKAQTLTAR----FSQLTLDGSGTRLQETAGQLSLKRPGLDAPNEQLLISNGEKVWLYDPDLEQVTIQKLDQRLTQTPALLLSGDISKISESFAITYKEGGNVVDF---KPKTKDTLFDTLRLSFRSGKVNDMQMDGVGQRTNILFFDVKMNEALDAKQF.................................................................................................................................................................................. 185
4 -7.2303zpp_A mol:protein length:443 CELL WALL SURFACE ANCHOR FAMILY PROTEIN  ali model follow..  10  33DRQAIQDAIDAAAQGLGGGNVYFPEGTYLVKEIVFLKSHTHLELNEKATILNGINIKNHPSIVFMDDGAQVEWGPTEDISYS------------GGTIDMNGALNEEGTKAK-----------NLPLINSSGAFAIGNSN--NVTIKNVTFKDSYQGHAIQIAGSKNVLVDNSRFLGQAISKESIQIEPLTRKGFPYALNDDGKKSENVTIQNSYFGKSDKSGELVTAIGTHYQTLSTQNPSNIKIQNNHFDNMMYAGVRFTGFTDVLIKGNRFDKKVKGESVHYRESGAALVNAYSYKNT..................................................... 323
5 -7.2202uve_A mol:protein length:608 EXOPOLYGALACTURONASE  ali model follow..  12  167DGKTLNTKAIAIDSCKPGCRVEIPAGTY-KSGALWLKSDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTI----ERPASLINAIDPNKPGTFRNIRITGSGVIDGNGWNQVEKAVSDGMDLKNAYGQRRSSLMTLRGVE--NVYLAGFTVRNPAHNVVANGLIHQANNGDGIEF-----NSQNVMVFNNGDDCINFAAGTGEKMKGAWLFNNYFRMGHGAIVTGSHTGAW----IEDILAENNVMYLT------DIGLRAKSTIGGGARNVTFRN.............................................................................. 484
6 -7.1103hbw_A mol:protein length:193 Fibroblast growth factor 13  ali model follow..  7  1.............GSKKRRRRRPEPQLKGIVTKLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPLRVVAIQGVQTKLYLAMNSE-------GYLYTSELFTPECKFKESVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKG.............................................................................................................................................................................................................. 130
7 -6.9801dbg_A mol:protein length:506 CHONDROITINASE B  ali model follow..  12  20...................................VAPCLGQVVASNETLYQVVKEVKPGGLVQIADGTIVSNSGKSGLPITIKALNP-----GKVFFTGDAKVELRGEHLILEGIWFKDGNRAIQAWKSHGP-GLVAIYGSYNRITACVFDCFDEACRIDHCSFTDKITFDQVI-TARAIKDGSVGGPGMYHRVD-NPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLNCQGTMNFRHGDHQVAINNFYIG.............................................................................. 285
8 -6.9705olq_A mol:protein length:522 Rhamnogalacturonan lyase  ali model follow..  12  7.........MDPEGSDSNPGTSDKPFATLVKVQEVVVAGDVVYINPGTVPMTTTNSGLYHCVFHMNKS------GEAGKPISYLA----PNKQGRPIFDLSQVKPKDQRITVFYVTGSNLYLKGFDVIGGANNNKFEDLRTHDGMAIGFYLLG-GTGNVFEGCRAWYNSDDGFDLINCFEAVK--------INCWSFLNGYKPG-------TKEVAGDGTGFKAGGYGMAADKLPAIPSVIPQHEVRNSLAYYNRLRGFYANHHLGGIFESNTAVN.............................................................................. 318
9 -6.9501bhe_A mol:protein length:376 POLYGALACTURONASE  ali model follow..  7  53.............................LSGPLSLPSGVSLLIDKGVTLRAVNNAKSFEN--APSSCGVVDKNGKGCDAFITAVSTT------NSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKLYNVSLIN--DGFTAWKTTIKTPSTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMG-----VYNVTVDDLKMNGT------TNGLRIKKSAAGVVNGVRYSN.............................................................................. 298
10 -6.7703jur_A mol:protein length:448 Exo-poly-alpha-D-galacturonosidase  ali model follow..  9  34.............GARGDGRTDCSESFKRAIEELSKQGGGRLIVPEGVFLTGPIHLKSNIE-LHVKGTIKFIPDPERYLPVVLTRFEGIELY-ENVAITGSGVLDGSADNMAERGTPVEERVFGKGHYLRPSFVQFYRCR--NVLVEGVKIINSPENVIIRNIEISSTGNDGIDPESCKYMLIEKCRFDTGDDSVVIKSG------------------------RDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSE.............................................. 353
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.