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Query: gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIQYNGITLLRDEDGTPMQVNIDLRVHGTELDAFMRAHGLTAQEQSEMLRSVTGEDISPTYVAGGKVQQHVRYLPEMKRQIQTETDRLFVSPRTRPVSVIRKEFPDLLLHRIVRVLTPIPRTKAATPKAFERYCGRDTFWVRFKMQGMMNVTWCVFFTIHDEGIVLVRHLAGAGENDEDLLast
1 -9.0903ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  13  5..................EDKYDFRALGLAIKEARKKQGLT---REQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKEV................................................ 115
2 -7.4803mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  9  1.........MSSGVDLGTENLYFQSNAMKTLKELRTDYGLT---QKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYENFVFTNDKKKSII........................................................................ 96
3 -7.0203qn0_A mol:protein length:141 6-carboxy-5,6,7,8-tetrahydropterin synthase  ali model follow..  12  21............................FKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVETCTAGCIYRGE............................................ 135
4 -6.6003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  14  3....................AMTERKIFNRLKSVLAEKGKT---NLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTK....................................................................................... 72
5 -6.4502yh5_A mol:protein length:127 DAPX PROTEIN  ali model follow..  14  5......VQSAADDTGLPLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDALVAVFQAAFS............................................................... 118
6 -6.3101lqy_A mol:protein length:184 PEPTIDE deformylase 2  ali model follow..  13  53YGLRPGIGLAAPQINVSKRFNPKIVSHSVQQCYLTTGEGCLSVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPADPFQVPDGAIPIGR.................................................................. 184
7 -6.3003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  7  4...................MSNNQQMMLNRIKVVLAEKQRT---NRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLI........................................................................................... 70
8 -6.1902oba_A mol:protein length:138 Probable 6-pyruvoyl tetrahydrobiopterin synthase  ali model follow..  14  18............................FKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHIRDFAEIKAIFKPIYEQLYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVETCTSGCEYRGD............................................ 132
9 -5.9801x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  12  15...........................GKVIQQGRQSKGLT---QKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAKSG............................................................................. 87
10 -5.9401o1z_A mol:protein length:234 glycerophosphodiester phosphodiesterase  ali model follow..  10  9VLGHRGYSAKYLEN-EAFMKAIEAGANGVELDVRLSKDGVVVSHDEDLKRLFGLDVKIRDATVSELKELTDGKITTLKEVFENVSDDKIINIEIKEREAADA.............................................................................. 112
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.