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Query: gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSILIIEDDIVFSRTISNWLVKQGMKTQCVATIAEARRAIAGKPFSLILADMRLPDDNSLSLLEWMRERRCTVPVIIMTNYGEVENAVTAIKLGATDYLRKPVQPDILLELIVGIKEGDSGKPSFYRGESAKAQEMYRQIELIACADISVLLRGASGTGKEHVAHEIHERSHRWNKPYVPVDCGTVPEELAASEFFGHLKGAFTGAESDKAGLFRTADGGTLFLDEIGNLSYRTQVMLLRALQEKRYRPLGDTREYPFDIRLVAATNENLEKAIAEGRFREDLFHRLNEFTIRLPLLAECREDILPLADFFLEEANAELGKRTGGFDREARSRLAAYQWPGNMREMKNTVRGAVLLTPDGERIAAGSLAFSVREADGADASETLALNDAQKEKECIMRALEETGGNRKEAARLLGISRSTLYEKLRKYGFQLast
1 -117.0004l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)  ali model follow..  39  10..NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKENYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKSSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS-EGKFIDRGELSCLVNSKGIKN----KHKSIKEIEKEEIIKVLKEVNFNKKLASEILGIPLRTLYRRLKEYGIE 447
2 -110.0005m7n_A mol:protein length:454 Nitrogen assimilation regulatory protein  ali model follow..  31  4.ADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLVFLDIWLQGLDGLALLDEIKKQHPELPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILVAERALETSKLKREVLVGTSLAMNQLRQTIERVAPTNSRIMITGPSGAGKELVARAIHAQSSRANGPFVTVNAATITPERMEIELFGTE----MDGGERKVGALEEAHGGILYLDEVADMPRETQNKILRVLVDQQFERVGGTKRVKVDVRIISSTAQNLEGMIAEGTFREDLFHRLSVVPVQVPALAARREDIPSLVEFFMKQIAEQAGIKPRKIGPDAMAVLQAHSWPGNLRQLRNNVERLMILTRGDELVTADLLPAEIGDTLPRAPTEPLREARERFEKEYLIAQINRFGGNISRTAEFVGMERSALHRKLKSLGV. 454
3 -108.0003dzd_A mol:protein length:368 Transcriptional regulator (NtrC family)  ali model follow..  39  1.KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYSKKAPPFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEGE....................................................................... 364
4 -107.0005ep0_A mol:protein length:396 Putative repressor protein luxO  ali model follow..  36  5.RQVLMVEDTASVAALYKSYLNPLGLNVSIVGTGKEALSFIQDIIPDLILLDLRLPDMTGMEVLERVRKEHGNVPVVIMTAHGSIDIAVEAIRYGAQDFLIKPCEADRLRITVNKALKAESKSNTSFIGNSLPMQAVYRVIESAASSKATVFITGESGTGKEVCAEAIHAASPRHDKPFIALNCAAIPKDLIESELFGHVKGAFTGASTERQGAVEMAHNGTLMLDELCEMDLDLQSKLLRFIQTGTYQKVGSSKMSSVDVRFVCATNRNPWEEVQEGRFREDLYYRLHVIPISLPPLRERGGDIIEIAHALLGLMSLEEGKSFSRFSEPVLRLFESYSWPGNVRELQNVIRNIVVLN-TDDEVKLEMVPPPILE......................................................... 390
5 -101.0001ojl_A mol:protein length:304 TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR  ali model follow..  43  2............................................................................................................................SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL-TGEYISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR.... 304
6 -96.5004qhs_A mol:protein length:267 Flagellar regulatory protein C  ali model follow..  33  9............................................................................................................................SHMVVADTKSLKLLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATLFGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKSIKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERHCKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILS-ENGHIQSEHILLEGVDWHD...................................................... 261
7 -93.2005exx_A mol:protein length:343 Transcriptional regulator FleQ  ali model follow..  40  4......................................................................................................................REPNLFRSLVGTSRAIQQVRQMMQQVADTDASVLILGESGTGKEVVARNLHYHSKRREGPFVPVNCGAIPAELLESELFGHEKGAFTGAITSRAGRFELANGGTLFLDEIGDMPLPMQVKLLRVLQERTFERVGSNKTQNVDVRIIAATHKNLEKMIEDGTFREDLYYRLNVFPIEMAPLRERVEDIALLLNELISRMEHEKRGSIR-FNSAAIMSLCRHDWPGNVRELANLVERLAIMH-PYGVIGVGELPKKFRHVDDPAEGLDLKDYLANLEQGLIQQALDDAGGVVARAAERLRIRRTTLVEKMRK.... 343
8 -92.1005nss_F mol:protein length:295 Psp operon transcriptional activator  ali model follow..  33  20............................................................................................................................DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLPGFTERARETLLNYRWPGNIRELKNVVERSVYRH-GTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPT....................................... 288
9 -62.5003n70_A mol:protein length:145 Transport activator  ali model follow..  21  2.............................................................................................................................ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYREL-------------------TPDNAPQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACLPL...................................................................................................................................... 144
10 -60.3003co5_A mol:protein length:143 Putative two-component system transcriptional response regulator  ali model follow..  26  4............................................................................................................................FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQK-----------------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAER----------CRVRVIASCSYAAG--SDGISCEEKLAGLFSESVVRIPPLS..................................................................................................................................... 143
11 -46.0004zpx_A mol:protein length:413 ATP-dependent protease Lon  ali model follow..  15  1................MGDNEKINREALAPREYGESLELGIETTTEEIEVPEKLIDQVIGVEVIKTAANQKRHVLLIGEPGTGAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKSVKSYILLFVMFTVMLALFIEFSATTLLMGLFVKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHEEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVMRTTMPDTIENRRKLVQFVAQEVKRDGK-----IPHFTKEAVEEIVREHLTLRLRDLGGIVRAAGDIAKGKKYVEREDVIEAVKMAK....................................................... 413
12 -40.1002qr3_A mol:protein length:140 Two-component system response regulator  ali model follow..  20  3LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKDGKKE.................................................................................................................................................................................................................................................................................................................. 133
13 -39.3003cfy_A mol:protein length:137 Putative LuxO repressor protein  ali model follow..  25  5.PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLV.................................................................................................................................................................................................................................................................................................................. 129
14 -39.1004d6x_A mol:protein length:148 BACTERIAL REGULATORY, FIS FAMILY PROTEIN  ali model follow..  25  17.ADILVVDDEVDIRDLVAGILSDEGHETRTAFDADSALAAINDRAPRLVFLDIWLQGLDGLALLDEIKKQHPELPVVMISGHGNIETAVSAIRRGAYDFIEKPFKADRLILVAERALETSKLKLE................................................................................................................................................................................................................................................................................................................... 142
15 -38.8001zy2_A mol:protein length:150 transcriptional regulator NtrC1  ali model follow..  33  2..NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKLRKEN.................................................................................................................................................................................................................................................................................................................. 125
16 -38.8001l5y_A mol:protein length:155 C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD  ali model follow..  22  4.PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRRLVMENGLKLAAALE......................................................................................................................................................................................................................................................................................................... 149
17 -37.9003crn_A mol:protein length:132 Response regulator receiver domain protein, CheY-like  ali model follow..  32  3LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFDIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKE..................................................................................................................................................................................................................................................................................................................... 125
18 -37.4001dc7_A mol:protein length:124 NITROGEN REGULATION PROTEIN  ali model follow..  28  4.GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ....................................................................................................................................................................................................................................................................................................................... 123
19 -36.7002jvj_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  26  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
20 -36.5002pkx_A mol:protein length:121 Transcriptional regulatory protein phoP  ali model follow..  20  2..RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNS....................................................................................................................................................................................................................................................................................................................... 120
21 -36.3002jvi_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  25  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
22 -36.2003jte_A mol:protein length:143 Response regulator receiver protein  ali model follow..  25  3LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLLMEN.................................................................................................................................................................................................................................................................................................................. 130
23 -35.8002jvk_A mol:protein length:132 Sporulation initiation phosphotransferase F  ali model follow..  24  4.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNLE.................................................................................................................................................................................................................................................................................................................... 126
24 -35.7003hdv_A mol:protein length:136 Response regulator  ali model follow..  25  8.PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLYQKRIGLMITDLRMQPESGLDLIRTIRASEAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE....................................................................................................................................................................................................................................................................................................................... 129
25 -35.6003cwo_X mol:protein length:237 beta/alpha-barrel protein based on 1THF and 1TMY  ali model follow..  12  1....................MGKRVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGSQAVVVAINTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALFREIDVRELKEYLKKHGVNVRLEGLLEHH........................................................................................................................................................................................................ 236
26 -35.3003w9s_A mol:protein length:131 OmpR family response regulator in two-component regulatory system with BasS  ali model follow..  30  2..KILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHNNQGLE.................................................................................................................................................................................................................................................................................................................. 125
27 -35.2001zh2_A mol:protein length:121 KDP operon transcriptional regulatory protein kdpE  ali model follow..  27  1MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHS....................................................................................................................................................................................................................................................................................................................... 120
28 -35.0003a0r_B mol:protein length:116 Response regulator  ali model follow..  19  1MKRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYRSDMSSW--AADEYVVKSFNFDELKEKVKKLLS.......................................................................................................................................................................................................................................................................................................................... 116
29 -34.9002lle_A mol:protein length:234 Chemotaxis protein CheY, Imidazole glycerol phosphate synthase subunit HisF chimera  ali model follow..  11  1....................MGKIVLIVDDATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAVENPSLITQLAQTFGSQAVVVAINTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAAAAASVIDGRELKEYLKKHG................................................................................................................................................................................................................... 224
30 -34.9003q15_C mol:protein length:126 Sporulation initiation phosphotransferase F  ali model follow..  25  6.EKILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKS....................................................................................................................................................................................................................................................................................................................... 125
31 -34.9004q7e_A mol:protein length:129 Response regulator of a two component regulatory system  ali model follow..  24  7.PRILLVEDDEGLGETLKERLEQDKYRVEWAKTISEAENLYRPNAFDLVVLDLRLPDGNGFDLAEMIVKKEKDLPFLFLTAQAGAQERLRGFELGAAEFIPKPFHLKEFLIRLERVISLTR....................................................................................................................................................................................................................................................................................................................... 126
32 -34.5003rqi_A mol:protein length:184 Response regulator protein  ali model follow..  18  8.KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVDLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQAEEALENPVVLSVDRL-HIQRVLAENNNNISATARA----NMHRRTLQRKLAKKP................................................................................................................................................................................................................................................................ 181
33 -34.4002qxy_A mol:protein length:142 Response regulator  ali model follow..  21  5.PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPRVTVSL................................................................................................................................................................................................................................................................................................................. 129
34 -34.4003snk_A mol:protein length:135 Response regulator CheY-like protein  ali model follow..  19  15.KQVALFSSDPNFKRDVATRLDAAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTGNQ....................................................................................................................................................................................................................................................................................................................... 135
35 -34.2005uic_A mol:protein length:144 Two-component response regulator  ali model follow..  26  20..RILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGLEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSG................................................................................................................................................................................................................................................................................................................... 142
36 -34.2001nxo_A mol:protein length:120 DNA-binding response regulator  ali model follow..  24  1MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ....................................................................................................................................................................................................................................................................................................................... 120
37 -34.1005lwk_A mol:protein length:122 Transcriptional regulatory protein  ali model follow..  34  1MTNILIVEDDPMVQFIHRNYLEKIGTTIYSSETIADAKKLLASRSIQLVLLDIRLKDGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRYRTKH........................................................................................................................................................................................................................................................................................................................ 122
38 -33.9001d5w_A mol:protein length:126 TRANSCRIPTIONAL REGULATORY PROTEIN FIXJ  ali model follow..  21  4.YTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLVALE.................................................................................................................................................................................................................................................................................................................... 126
39 -33.8004qpj_C mol:protein length:152 Cell cycle response regulator CtrA  ali model follow..  25  30..RVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGYEVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRR......................................................................................................................................................................................................................................................................................................................... 146
40 -33.7005lwl_A mol:protein length:122 Transcriptional regulatory protein  ali model follow..  32  2ATNILIVEDDPMVQFIHRNYLEKIGTTIYSSETIADAKKLLASRSIQLVLLAIRLKDGNGIDFLTDLRRTKQTVDVILITAANEVNIVNDALHLGVIDYLIKPFTLERFEKSIQRYRTK......................................................................................................................................................................................................................................................................................................................... 122
41 -33.7003hdg_A mol:protein length:137 uncharacterized protein  ali model follow..  23  7ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAKEG................................................................................................................................................................................................................................................................................................................... 131
42 -33.5003eod_A mol:protein length:130 Protein hnr  ali model follow..  29  8.KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVDLNRLREMVFACLYPSMFN..................................................................................................................................................................................................................................................................................................................... 130
43 -33.2002jb9_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB  ali model follow..  23  3.RRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWMLPGGSGIQFIKHLKRESRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
44 -33.2001b00_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB  ali model follow..  25  3.RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
45 -33.1002jba_A mol:protein length:127 PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB  ali model follow..  24  3.RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRIS....................................................................................................................................................................................................................................................................................................................... 124
46 -33.0002qzj_A mol:protein length:136 Two-component response regulator  ali model follow..  25  5.TKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVT-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMNSYVNN.................................................................................................................................................................................................................................................................................................................. 128
47 -33.0001mvo_A mol:protein length:136 PhoP response regulator  ali model follow..  21  4.KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEIRAP................................................................................................................................................................................................................................................................................................................... 127
48 -32.8003t6k_A mol:protein length:136 Response regulator receiver  ali model follow..  23  5.HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTIETP................................................................................................................................................................................................................................................................................................................... 130
49 -32.8004nic_A mol:protein length:128 DNA-binding transcriptional regulator RstA  ali model follow..  24  5.NKIVFVEDDPEVGTLIAAYLGKHDMDVVVEPRGDRAEEVIAREKPDLVLLDIMLPGKDGMTLCRDLRGQW-QGPIVLLTSLDSDMNHILSLEMGASDYILKTTPPAVLLARLRLHLRQH........................................................................................................................................................................................................................................................................................................................ 122
50 -32.8003cnb_A mol:protein length:143 DNA-binding response regulator, merR family  ali model follow..  21  9.FSILIIEDDKEFADMLTQFLENPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSEG.................................................................................................................................................................................................................................................................................................................. 137
51 -32.7003cg4_A mol:protein length:142 Response regulator receiver domain protein (CheY-like)  ali model follow..  12  8.GDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQTG................................................................................................................................................................................................................................................................................................................... 133
52 -32.6005hm6_A mol:protein length:133 BfmR  ali model follow..  27  10LPKILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLTVCREVRPHY-HQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDKTVE................................................................................................................................................................................................................................................................................................................... 133
53 -32.5003n53_A mol:protein length:140 Response regulator receiver modulated diguanylate cyclase  ali model follow..  24  3LKKILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYSD................................................................................................................................................................................................................................................................................................................... 128
54 -32.5002zwm_A mol:protein length:130 Transcriptional regulatory protein yycF  ali model follow..  24  3.KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQL....................................................................................................................................................................................................................................................................................................................... 121
55 -32.4005t3y_A mol:protein length:125 Two-component system response regulator  ali model follow..  23  2IRTILAIDDSATMRALLHATLAQAGYEVTVAADGEAGFDLAATTAYDLVLTDQNMPRKSGLELIAALRQLSADTPILVLTTEGSDAFKAAARDAGATGWIEKPIDPGVLVELVATLSEPAA....................................................................................................................................................................................................................................................................................................................... 124
56 -32.4004ja2_A mol:protein length:122 Response regulator  ali model follow..  24  3.KKVLLVDDSAPIRKMVSFVLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLNE......................................................................................................................................................................................................................................................................................................................... 122
57 -32.4001zgz_A mol:protein length:122 TorCAD operon transcriptional regulatory protein torR  ali model follow..  27  3.HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERS-TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRID....................................................................................................................................................................................................................................................................................................................... 121
58 -32.3003kto_A mol:protein length:136 Response regulator receiver protein  ali model follow..  21  7.PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK....................................................................................................................................................................................................................................................................................................................... 128
59 -32.1004dad_A mol:protein length:146 Putative pilus assembly-related protein  ali model follow..  16  14MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQCAQRD.................................................................................................................................................................................................................................................................................................................... 140
60 -32.1004dn6_A mol:protein length:146 Putative pilus assembly protein CpaE  ali model follow..  16  14MINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQRTDGLDAFDILMIDGVALDTAELAAIEKLSRLHPGLTCMLVSADASSQTLLEAMRAGVRDVLRWPLEPRALDDALKRAASQCAQRD.................................................................................................................................................................................................................................................................................................................... 140
61 -32.0005xso_A mol:protein length:215 Response regulator FixJ  ali model follow..  24  15.GHIYVIDDDAAMRDSLNFLLDSAGFGVTLFDDAQAFLDALPGLSFGCVVSDVRMPGLDGIELLKRMKAQQSPFPILIMTGHGDVPLAVEAMKLGAVDFLEKPFEDDRLTAMIESAIRQAEPAAK----SEAVAQDIAARVASLSPRERQVMEGLIAGLSNKLIAREYDISPRT-----IEVYRANVMTKMQANSL............................................................................................................................................................................................................................................ 200
62 -32.0003c3m_A mol:protein length:138 Response regulator receiver protein  ali model follow..  18  3LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRHSIAA................................................................................................................................................................................................................................................................................................................... 129
63 -31.9001xhe_A mol:protein length:123 Aerobic respiration control protein arcA  ali model follow..  24  4.PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQA-NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM....................................................................................................................................................................................................................................................................................................................... 122
64 -31.9004h60_A mol:protein length:120 Chemotaxis protein CheY  ali model follow..  23  2MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKARFDVIISDVNMPVMTGFEFVKAVRMQSKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL........................................................................................................................................................................................................................................................................................................................... 120
65 -31.9006azr_B mol:protein length:123 Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY  ali model follow..  25  4.KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLNE......................................................................................................................................................................................................................................................................................................................... 123
66 -31.9003gt7_A mol:protein length:154 Sensor protein  ali model follow..  25  8.GEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKRTEE................................................................................................................................................................................................................................................................................................................... 133
67 -31.8004hnq_A mol:protein length:124 Chemotaxis protein CheY  ali model follow..  25  6..KILIVDDFSTMRRIVKNLLRDLGFNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEKHLPVLMITAEAKREAIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE.......................................................................................................................................................................................................................................................................................................................... 124
68 -31.8005xjp_A mol:protein length:145 AdeR  ali model follow..  28  14.KVILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEVLNKIRQKA-QTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANK................................................................................................................................................................................................................................................................................................................... 136
69 -31.8003lte_A mol:protein length:132 Response regulator  ali model follow..  22  7.KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE......................................................................................................................................................................................................................................................................................................................... 125
70 -31.8002rjn_A mol:protein length:154 Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain  ali model follow..  14  9..TVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKSRFLLKPWEDEDVFKVVEKGLQLAFLREEN.................................................................................................................................................................................................................................................................................................................. 133
71 -31.7003hv2_A mol:protein length:153 Response regulator/HD domain protein  ali model follow..  18  16..EILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEYRYLSKPWDDQELLLALRQALEHQHSERER.................................................................................................................................................................................................................................................................................................................. 140
72 -31.6002zay_A mol:protein length:147 Response regulator receiver protein  ali model follow..  16  9.WRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYEDLS................................................................................................................................................................................................................................................................................................................... 134
73 -31.6001yio_A mol:protein length:208 response regulatory protein  ali model follow..  17  5.PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQ----ARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVT-----VKVHRHNIMQKLNVRSL............................................................................................................................................................................................................................................ 190
74 -31.5004uhj_A mol:protein length:136 TRANSCRIPTIONAL REGULATORY PROTEIN CPXR  ali model follow..  26  1MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ................................................................................................................................................................................................................................................................................................................... 123
75 -31.3001p6q_A mol:protein length:129 CheY2  ali model follow..  22  8..KVLIVDDQVTSRLLLGDALQQLGFKITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGALK....................................................................................................................................................................................................................................................................................................................... 129

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.