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Query: gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFRFDFRDKGMIPPILGTDNADYLERLCPVLERERIHPSGVVRLRDAAFCEERGIAHLSSSAEHMTLLENEDYRRLGHRFGMDGDVIRNGLAAFPTCMVVEYEGKVLLFDKTDSGDRMLDAFLSRLAERFFDGKRKSGSLRFYEVAPLDAAYRAKIGDGQTVSSDMVRYGICVACCDMAPTLRNFNKLRNLQRQPIPLTGEQEQIVSSLVVQPDNVRFPNVEMRVRIPVKRKGQGMNILast
1 -7.0302m4l_A mol:protein length:99 protein BT_0846  ali model follow..  24  18.................................................................................................TGIEGTHKLLSFDEDGTGSFGIYSNATPISFQMFDYKIEEGRIYIYDVYPDEKT....................................................................................... 71
2 -6.6703c01_E mol:protein length:98 Surface presentation of antigens protein spaS  ali model follow..  16  8.IYFK-PELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLF-KTHRRYDLVSLEEIDEVLRLLVWLEEVENAGKD........................................................................................................................................................... 87
3 -6.4202vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS  ali model follow..  8.IYFN-PEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLY-KTHTKYSFVDFEHLDEVLRLIVWLEQVENTHLE........................................................................................................................................................... 87
4 -6.4101ukf_A mol:protein length:188 Avirulence protein AVRPPH3  ali model follow..  10  135..................................................................................................ACSCEGSQFKLFDPNLGESAAPQLIKGLIDHYNSLNYDVACVNEFRVS............................................................................................ 187
5 -5.7402v5i_A mol:protein length:559 SALMONELLA TYPHIMURIUM DB7155 BACTERIOPHAGE DET7 TAILSPIKE  ali model follow..  14  1........................................MVSVGDAAFRQEANKKFKYSVKLSDYSTLQDAVTDAVDNFTDGESVDFXGKILTINCKAKFIGDGALIFNNMGPGSVINQPFMESKT---------------WVIFPWDADGKWITD-----AALVAATLKQSKIEGYQPGVNDWVKF-PGLEALLPQNVKDQHIAATLDIRSAS....................... 164
6 -5.7002v4x_A mol:protein length:140 CAPSID PROTEIN P27  ali model follow..  11  1............PVFENNNQRYYLKELKIACSQYGPTAPFTIAMIENL--GTQALPPNDWKQTARACLSGGDYLLWKSEFFEQCARIADVNRQQGIQTSYEMLIGEGPYQATDTQLNFLPGAYAQISN.............................................................................................................. 121
7 -5.7003bzv_B mol:protein length:83 EscU  ali model follow..  10  8.LYYK-LGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLY............................................................................................................................................................................................. 54
8 -5.6903bzz_B mol:protein length:83 EscU  ali model follow..  10  8.LYYK-LGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLY............................................................................................................................................................................................. 54
9 -5.6606eub_A mol:protein length:231 Angiopoietin-related protein 4  ali model follow..  11  26........................................................................................QGSPPFLVNCKMTSDGGWTVIQRRHDGSVDFNRPWEAYKAGF-----------------------GDPHGEFWLGLEKVHSITGDRNSRLAVQLRDWDGNAELLQFSVHLGGEDTAYSLQLTAPVAGQLGATTVPPSGLSVPFSTWDQD. 151
10 -5.6403bzy_B mol:protein length:83 EscU  ali model follow..  10  8.LYYK-LGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLD............................................................................................................................................................................................. 54

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.