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Query: gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEKENTNGGSVYVTVDGHFKPVHVSMKGTGEKGFLEFMLEDVEKALKETEMPVIGMMYYNVPDMGIVPHLWEGNNDDYLQRLEKAMDGHGIKLHRYLRLSEVVYCLLast
1 -7.9202vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS  ali model follow..  16  1...................................................PTHIAIGIYFPEIAPAPFISLIETNQCALAVRKYANEVGIPTVRDVKLARKLY.. 54
2 -7.6803c01_E mol:protein length:98 Surface presentation of antigens protein spaS  ali model follow..  9  1...................................................PTHITIGIYFPELMPIPMISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLF.. 54
3 -7.6005cul_A mol:protein length:126 Translocation protein in type III secretion  ali model follow..  10  18.....................IKSKRRQFHQELQSSNLRADVRRSSVIVANPTHVAIGIRYRGETPLPLVTLKHTDALALRVRRIAEEEGIPVLQRIPLARALL.. 101
4 -7.3403bzy_B mol:protein length:83 EscU  ali model follow..  13  1...................................................PTHIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLD.. 54
5 -7.3303bzv_B mol:protein length:83 EscU  ali model follow..  15  1...................................................PAHIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLY.. 54
6 -7.3203bzz_B mol:protein length:83 EscU  ali model follow..  15  1...................................................PTHIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLATSLY.. 54
7 -7.2903bzx_B mol:protein length:83 EscU  ali model follow..  15  1...................................................PTAIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLY.. 54
8 -7.2803t7y_A mol:protein length:97 Yop proteins translocation protein U  ali model follow..  11  2.....................................TSSQIKHASAVVSAPKDIAVAIGYPEKYKAPWIIAMGVNLRAKRIIAEAEKYGVPIMRNVPLAHQLL.. 69
9 -6.8005vit_C mol:protein length:99 MdcC  ali model follow..  12  24......GSGDLEVLLEPGQPGKLSIQVQTSVNGSASRWQHLFERLFDGQTPPA---LLIDIHDFGATPGVVRLRLEQGFEEI........................ 96
10 -6.7103bzp_A mol:protein length:137 EscU  ali model follow..  10  25.....................IKGERRRLHSEIQSGSLANNIKKSTVIVKAPTHIAICLYYLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSLY.. 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.