current user: public
If you have questions about the server, please let us know.

Query: gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482], from B.thetaiotaomicron

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .
# Score Template Links and tools%idFirst MVSTSTHDDAFDFDFGYTGKLQFLVATVDANSTYYTKDPNGIECDNDGSSSSLTPFTHPTISNLTIVGTVNGKVAQSAMGDGKSMKSCANFRRNCQFTLVNSILYGYPTGILCETTNSYVFKNNVVNGVSTTFSGITADATNTAAASAEAIGLTSPWGGYTGLMPNASPANAGADFSELDSWFTTTSYRGAVGGRSNWLTQAWVKLast
1 -5.830d3pmea2 b.42.4.0 (A:1086-1280) automated matches {Clostridium botulinum [TaxId: 1491]}  ali model 3D-neighbors follow..  9  9.......GNPLKFDTEY-----YMI--------NYNYIDRYIAPKNNILVLVQYSDISKLYTKNPITIKSAANKNPYSRILNGDD---IMFHMLYDSREYMIIRDTDTIYATQGGQCSKNCVYALKLQSNLGNYGIGIFSIKNIVSQNKYCSQIFSSFMKNTMLLADIYKPWRFSFENAYTPVAVTNYETKLLSTSSFWKPGWVE 195
2 -5.730d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  11  9.......GDTVLVYKGRVGKVKEVLPKKYA-VEGVNIVKKAVRVSPKYPQGGFIEKEAPLASKVRPICPACGKPTRVRKKFL---ENGKKIR................................................................................................................. 96
3 -5.680d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}  ali model 3D-neighbors follow..  13  30.........................................LQKRPDECGNRGVKFEPGQFMDLTIPGTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLS........................................................................................... 102
4 -5.470d4o32a1 c.47.1.0 (A:70-157) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  11  6..........LYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDLIALIK................................................................................................................... 85
5 -5.320d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}  ali model 3D-neighbors follow..  10  219...IATGDDNVAIKAYKGRAETRNISILHNDFGT----GHGMSIGSETMG-----VYNVTVDDLKMNGT----------------TNGLRIKSDNGVRYSNVVMKNVAKPIVID........................................................................................... 311
6 -5.080d2yxda_ c.66.1.0 (A:) automated matches {Methanocaldococcus jannaschii [TaxId: 243232]}  ali model 3D-neighbors follow..  15  28.LNLNKDDVVVDVGCG-SGGMTVEIAKRCKFV--------AIDYLDGAIEVTKQNLAKFNIKNCQII.......................................................................................................................................... 85
7 -5.060d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  207WLDVQPEDRVLDLFCG-MGNFTLPLATQAASV--------GVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL-RAGAAGVMQQIIKLEPIRIVYVSCNPATLARD.................................................................................. 323
8 -5.060d1oaca4 d.82.1.1 (A:5-90) Copper amine oxidase, domain N {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  3MVPMDKTLKEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQPLALQVPVV---MKDNKAWV.......................................................................................................................................... 66
9 -5.050d4es1a1 d.58.58.0 (A:1-87) automated matches {Bacillus halodurans [TaxId: 272558]}  ali model 3D-neighbors follow..  12  4LITYDVQTSSAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTIDEEKDSLRIYRLGNNYKTKVEHIGAKPS..................................................................................................................................... 87
10 -5.040d3r3ra1 b.81.1.0 (A:1-181) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  48........DVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLE-SGYLYLGSPVKQ.............................................................................................. 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.